G225730 (cadm4)


Basic Information

Item Value
gene id G225730
gene name cadm4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13761191 ~ 13883537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU258187
TGGTATCTCCCGGCGGTCCCTGATCCAGCGCAGCGTGGCGGGGGGCTTGCTGCGCGGCGACAGGCAGGTGAGCTCCACCTCGCCCCCCTCCACGGCCTCCTGCCTCACCTCCACCGTGGGGGTGTCGGGAGGGACGGACACGGACAGAGTGGCCACTTGGTGGTGGGTATCGTCGGTGTAGAGCTGGCAGAAGAAGCCGCCCTCGTCCGACACGCTCACGTTGGTGAGGGTGATGCGCACCAGACGGGGAGTGAAGAGAACCATCTGGAAACGATCGTCCTTCAAcgctcgtGTGCCATTGAAGAAGAGGGTCTGTCTGCGAGGGTTCTGGATAACCACAATGGAGCCGTCATAGTTCTGCAGACGACAGGAGATCTGGGCCGTGCCTCCCTCCAACACTGTCACATTCTCAGCCTGCACCGCCTGGCAACAcgCTGTCCCCACAAGAGATAGCAAAGTGATGACAGACAAGGGAACGGAGTAGTTCCACACGGCCGTAAATGCCATCTTTGATAGTCCCGCTGATCTCTTTTTGGTATTCCTCTTCCTTGGAGAAATCAAAGTGACGTGAACCCGCAGGTTCACCCGCGAATAAAGCCTGGAGTGTGTCTGGTTCTGTTTAACAACATTTGCGGGGGGTTTTTACATACAAAAAAAAGTGCTTACAACTAGACACATACGCCCACTTTTTTTCTCGTTGACGTGACTAAACGA

Function

symbol description
cadm4 Acts upstream of or within bulbus arteriosus formation; glial cell development; and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; immature eye; nervous system; and presumptive bulbus arteriosus. Orthologous to human CADM4 (cell adhesion molecule 4).

NR:

description
cell adhesion molecule 4-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258187 True 714 lncRNA 0.41 3 13761191 13883537

Neighbor

gene id symbol gene type direction distance location
LOC110510221 LOC106577525 coding upstream 219865 13539000 ~ 13541326 (+)
apoa2 apoa2 coding upstream 228505 13529662 ~ 13532686 (+)
LOC110510206 LOC106577511 coding upstream 241158 13517648 ~ 13520035 (+)
apoe LOC106605689 coding upstream 249295 13504087 ~ 13511896 (+)
LOC110510198 LOC106577505 coding upstream 274906 13484307 ~ 13486285 (+)
LOC110503682 trp-iii coding downstream 117615 14001152 ~ 14003950 (+)
LOC110510707 LOC106593417 coding downstream 189863 14073400 ~ 14075519 (+)
LOC110510523 LOC106573797 coding downstream 256749 14140286 ~ 14152666 (+)
LOC110510755 LOC106561134 coding downstream 321370 14204907 ~ 14219816 (+)
LOC110510617 LOC106578046 coding downstream 343288 14226825 ~ 14268614 (+)
G225731 LOC106577561 non-coding upstream 1924 13751766 ~ 13759267 (+)
G225729 NA non-coding upstream 15966 13693837 ~ 13745225 (+)
G225749 LOC102796463 non-coding upstream 37212 13718240 ~ 13723979 (+)
G225727 NA non-coding upstream 69135 13691830 ~ 13692056 (+)
G225714 NA non-coding upstream 103138 13657735 ~ 13658053 (+)
G225841 NA non-coding downstream 3012 13886549 ~ 13902578 (+)
G225882 NA non-coding downstream 76598 13960135 ~ 13960360 (+)
G225884 NA non-coding downstream 78928 13962465 ~ 13963863 (+)
G225897 NA non-coding downstream 100251 13983788 ~ 13984018 (+)
G225857 NA non-coding downstream 103132 13986669 ~ 13988035 (+)
G225710 NA other upstream 115180 13645569 ~ 13646011 (+)
G225672 NA other upstream 210609 13550098 ~ 13550582 (+)
G225671 NA other upstream 214213 13545873 ~ 13546978 (+)
G225651 NA other upstream 266756 13493885 ~ 13494435 (+)
G225859 LOC106605594 other downstream 106699 13990236 ~ 13992021 (+)
G225920 NA other downstream 163049 14046586 ~ 14046848 (+)
LOC110510822 smg9 other downstream 394895 14278350 ~ 14284963 (+)
G226807 LOC106578340 other downstream 505940 14389198 ~ 14390428 (+)

Expression


Co-expression Network