G225884


Basic Information

Item Value
gene id G225884
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13962465 ~ 13963863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU258397
tacagtaccaatcaaacatttacacatctactcatttttattttttacaatgtataataatagtgaagaaatcaaaactatgaaataacatatggaatcatgtagtaaaaaaagtgtaaaacaaaataaaagtagccaccctttgcacgctcttggcattctctcaaccagcttcatgaggtagtcgcctggaatgcatttcaattaacaggtgtgccttgttaaaagttcatttgtggaatttctttccttcttaatgcatatgtgcgaatcagttgtgttgtgacaagttacgGGAGGTATACAGAataaagccctatttggtaaaagaccaagttcatattatagcaagaacaactcaaatagcAGAGAAAGTACAGGCCATCATAacttttagacatgaaggtcagtcaatacggagtgcagtcgcaaaaaccatcaagctctatggttctctggctctcatgaggaacgccacaggaaaggaagacccagagatacctctactgcagaggataaattcattagttaccagccgcagaaattgcagcccaaataaatgcttcatagagttcaagtaacagacatatctcaaaatcaactgttcagagactgtgtgaatcaggccttcatggtcaaatagctactactaaaggacaccaataagaagaagacttgcttgggccaagaaacactagcaatggaattagaccggtggaaatcggttctttggtctgatgtgtcccaattttagatttttggttccaaccgccatgtctttgtgagacgcagagtaggtgaacagatgatctccgcatgtgtggttcacaaccgtgaagcatggaggtggtggtgtgatggtgctttgctggtgactgtcagtgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcgatacaccatcccatttcatttgggcttagtgggactataatttgtttttcaacaggacaatgacccaacataccaacaGGCTGTGaaagggcaatttgaccaagaaggagagtgatggagtactacatcagatgaccaggcctccacaatcacctgacctcaacccaattgagatgatttgggatgagttagaccacagagtgaaggaaaagcagccaacaagtgttcagcatatgtgggaactccttcaagactgttggaaaagcactccaagtgaagctgattgagagaataacaagagtgtgcaaatctgtcatcaaggcaaagggtggctattttgaacaatctcaaatatattttgattggtttaacacttttttggttactacatgattccatatgtgtcatttcatagttttgatgttgtcact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258397 True 1373 lncRNA 0.48 2 13962465 13963863

Neighbor

gene id symbol gene type direction distance location
LOC110510221 LOC106577525 coding upstream 421139 13539000 ~ 13541326 (+)
apoa2 apoa2 coding upstream 429779 13529662 ~ 13532686 (+)
LOC110510206 LOC106577511 coding upstream 442432 13517648 ~ 13520035 (+)
apoe LOC106605689 coding upstream 450569 13504087 ~ 13511896 (+)
LOC110510198 LOC106577505 coding upstream 476180 13484307 ~ 13486285 (+)
LOC110503682 trp-iii coding downstream 37289 14001152 ~ 14003950 (+)
LOC110510707 LOC106593417 coding downstream 109537 14073400 ~ 14075519 (+)
LOC110510523 LOC106573797 coding downstream 176423 14140286 ~ 14152666 (+)
LOC110510755 LOC106561134 coding downstream 241044 14204907 ~ 14219816 (+)
LOC110510617 LOC106578046 coding downstream 262962 14226825 ~ 14268614 (+)
G225882 NA non-coding upstream 2105 13960135 ~ 13960360 (+)
G225841 NA non-coding upstream 59887 13886549 ~ 13902578 (+)
G225730 cadm4 non-coding upstream 78928 13761191 ~ 13883537 (+)
G225897 NA non-coding downstream 19925 13983788 ~ 13984018 (+)
G225857 NA non-coding downstream 22806 13986669 ~ 13988035 (+)
G225855 LOC106578138 non-coding downstream 29337 13993200 ~ 13996338 (+)
G225856 LOC106605595 non-coding downstream 32705 13996568 ~ 13996976 (+)
G225858 si:ch211-261d7.3 non-coding downstream 33254 13997117 ~ 13997877 (+)
G225710 NA other upstream 316454 13645569 ~ 13646011 (+)
G225672 NA other upstream 411883 13550098 ~ 13550582 (+)
G225671 NA other upstream 415487 13545873 ~ 13546978 (+)
G225651 NA other upstream 468030 13493885 ~ 13494435 (+)
G225859 LOC106605594 other downstream 26373 13990236 ~ 13992021 (+)
G225920 NA other downstream 82723 14046586 ~ 14046848 (+)
LOC110510822 smg9 other downstream 314569 14278350 ~ 14284963 (+)
G226807 LOC106578340 other downstream 425614 14389198 ~ 14390428 (+)

Expression


Co-expression Network