G225855 (LOC106578138)


Basic Information

Item Value
gene id G225855
gene name LOC106578138
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13993200 ~ 13996338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU258344
TATTAATCTTTAGTCAATACATGTCTCAGAACCGAGTCAGACCCTTCAACTATATTTAGGTATATAAATTGTGCAAAATGgtacacaaatgcttcatttttttttttttttacagatccCTTGCATTTTGTCTACACATCAGACACTGCATGCAAGATAACACATACATCATACTTGTAGATAATGCTTAATAAATTGATAATATCACAAAAAACAGAAAGGAAATCTGAAGCAAAATGCATACTGATGCAGATTTTCATTTAAGAGCTATGTAGGGAAACAGTTCCATATCTTAAACATTATAGTCCAATTATAATGATTTATCATCACATGTTAAATACACATTGTATAATACTTTATTCTAAGATTTGCATGTGTATGTCCAGCCTGTCACACAATGCATGTTTAATATGCATCATAAAACTGGATGAGCAATCAGAACATGTACATATGCATTGGAATATTACATTTCAATGGTCTTTTACTAATATGCTCTAATGATAGATTGCTGCAGACTCCAATGTGCTTTCTGTTAACGTAATGCTGATTGTCTATCTACAAGATTTGGACAAAACAGAAATCTCTGACATTTCTTGGTTCTATTGCGGCAACTTCCAACCAATACATTATGCTAATATATATGGATCAGGGCTGAACCTTCAATTAGCCTACTGTGTTTAGTttaaataatatatacagtacattcggaaagtattcagaccccttgactttttgcacattttgttacgttaaagccttattctaaaatgtattcaattgtttttttcttccatcaatctacacacgctaccccataatgacaaagcaaggtttttagaaatgtttgcaaatgtaaaaataaataaatatcacacTTCCCTAAGTAtttagactctttactcagtacagAGCACACTCTActtactttgttgaaacacctttggcagcgattacagcctcgagtcttcttgggtatgacgctacaagcttggcacacctgtatttggggagcgttactgcacagctattttccggtctctccagagatgttcgatcaggttcaagtccgggctctggctgggccacaggATATTCACagacttgtaccgaagccactactgcattgttttggctgagtgcttagggttattgtccttttgaaaggtgaaccttcacctcaatctgaggtcctgagtgctctggagcaggttttcatcaaggatctctctgtactttgctctgttcatctttcaatcTGACTAGGCTCCCTGTCCCtttcgctgaaaaacatccccacagcatgttgctACCTCCACCATGcgtcacagtagggatggtgccagatttcctcaagacgtgacgcttggcattcaggccaatgagttcaaccttggtttcatcagatcagagaatcttgtttctcatggtctgagagtctttaggtgccttttggcaaactccaagcgggctatcatgtgcctttaactgaggagtggcttccgtctggccactctaccaataaagcctgattggtggagtgctgcagagatggttgtccttctggaaggttctcccatctccacagaggaactctatcagagtgaccatcgggttcttggtcacctccctgaccaaggcccttctccaattgctcagtttggcctggagGCCAGCCCTAGGAAGATTTTGGTTGTtccacttcttccatttaaaaatgatagaggccagtgtgttcttggggacattcaatgctgtagacattttgtagtacccttccacagatctgtgccttgacacaatcctgtctcggagctctacagacaattccttcgacctcatggcttggtttttgctctgacatgcactgtcaactctgggaccttaaTTTACCACGGTGGActctcaagttgtagaaacatctcaaggatgatcaatggaaaaaggatgcacctgatctcaatttcaagtctcatagcaaagggtcttaatacttatgtaaattattgtaaacatttattaaaacctgttttcactttgtcattatggtgtattgatgaggaaaaacattaatttaatccattttagaataaggctgtaacgtaacaaaatgtggaaaaagtcaaggggtctgaatactttacacaACAAATGTACTCATAAAACAACTTTTTCAGCATTGGTTGAAATTAGAGGGACACAATTATTTCAAATCAGATTGTataagagaaaataaataaagtacATCAAAGCTTATGTAAATCTCTTTATCTAACGCCTTCTTCTTCGTCTATGATCAACAATTCTCCCCCGCCTTGGCCGTTGGACAATTCCATTCATGACTGCGGGTGGATTTGGACGGGTGGTACCATCAAGAATATCTGGGGGTGGTGGTACAGGGGCAACTGCTAAAGTTGGTTGATTACTTGGACTCTGGGGGTGTTGCGGTTGCTGTGGTAGCGGTTGtatctgttgttgctgctgctgctgcaccaGCTGGGGTTGCTGTAGTAgcaattgttgttgttgtggttgtatctgttgttgctgctgctgctgaatcGGTTGTTGAGGCTGTGGTTTCTGCTGCTGTAACTGTTGTGGTTGTTGCGTTGACTGTTGTGGCTCTTGTTTTTGGGAATGATGTGGCTGCTgctgtggtggttgttgttgttgctgctgctgctgctgtgccTCTAGGACTCCCAGCAGCCTTTGCAGGAGAACATTGTTTTGCTGTAGGCTGGTTGCCAGTGCCTCTTGAGAGACCACTAATGTTCTCATATCACGTCTGAATCCCTCCCCAAACTCCCGAAGACTCTGCTCCACCCGATCCCCCAGCTGCAGAGCTGCCTCCCCCATGCCACGGAGCTCGTCCTCCAGCCATGAGCCACGAGGAGGGGCCTCCAGGGGTCCCTGCTGGGCCCCTAGTGAGGGCTGGGGACTAGGCTGAGGGGTCCCATTGAGGAAAGGGGCGctgtagaggggagagggaggcagccaGCGTTCCGAGTTAGGGGGAGGCCCTATTCCCAGTCCTAAACCCAGCTTTTCCTCCATACTGCTCTCTGCCCCCTCGCATTCC

Function

NR:

description
RNA polymerase II degradation factor 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258344 True 3082 lncRNA 0.46 2 13993200 13996338

Neighbor

gene id symbol gene type direction distance location
LOC110510221 LOC106577525 coding upstream 451874 13539000 ~ 13541326 (+)
apoa2 apoa2 coding upstream 460514 13529662 ~ 13532686 (+)
LOC110510206 LOC106577511 coding upstream 473167 13517648 ~ 13520035 (+)
apoe LOC106605689 coding upstream 481304 13504087 ~ 13511896 (+)
LOC110510198 LOC106577505 coding upstream 506915 13484307 ~ 13486285 (+)
LOC110503682 trp-iii coding downstream 4814 14001152 ~ 14003950 (+)
LOC110510707 LOC106593417 coding downstream 77062 14073400 ~ 14075519 (+)
LOC110510523 LOC106573797 coding downstream 143948 14140286 ~ 14152666 (+)
LOC110510755 LOC106561134 coding downstream 208569 14204907 ~ 14219816 (+)
LOC110510617 LOC106578046 coding downstream 230487 14226825 ~ 14268614 (+)
G225857 NA non-coding upstream 5165 13986669 ~ 13988035 (+)
G225897 NA non-coding upstream 9182 13983788 ~ 13984018 (+)
G225884 NA non-coding upstream 29337 13962465 ~ 13963863 (+)
G225882 NA non-coding upstream 32840 13960135 ~ 13960360 (+)
G225841 NA non-coding upstream 90622 13886549 ~ 13902578 (+)
G225856 LOC106605595 non-coding downstream 230 13996568 ~ 13996976 (+)
G225858 si:ch211-261d7.3 non-coding downstream 779 13997117 ~ 13997877 (+)
G225919 NA non-coding downstream 49958 14046296 ~ 14046583 (+)
G225921 LOC106595663 non-coding downstream 51623 14047961 ~ 14053086 (+)
G225931 NA non-coding downstream 73304 14069642 ~ 14126977 (+)
G225859 LOC106605594 other upstream 1179 13990236 ~ 13992021 (+)
G225710 NA other upstream 347189 13645569 ~ 13646011 (+)
G225672 NA other upstream 442618 13550098 ~ 13550582 (+)
G225671 NA other upstream 446222 13545873 ~ 13546978 (+)
G225920 NA other downstream 50248 14046586 ~ 14046848 (+)
LOC110510822 smg9 other downstream 282094 14278350 ~ 14284963 (+)
G226807 LOC106578340 other downstream 393139 14389198 ~ 14390428 (+)
G226791 NA other downstream 412534 14408872 ~ 14410081 (+)

Expression


Co-expression Network