G225921 (LOC106595663)


Basic Information

Item Value
gene id G225921
gene name LOC106595663
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14047961 ~ 14053086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU258444
tattttgtttattaatGAATTTTGATTGAAACACCATTCATACAAAAGTAACACCCAATAAGGAAAAACTGTCAACAAATGTTGCCCTTGAACTACTACATCCAAAACACATATTTAAGGCATTTGAATGAATGATAGAATGTTTCTGAACATAGCTTACAACAATGGTCAATTTCATGTCAAATACTTAAATGGTTACGATCATGTCATATTTACATAATATACACAATGCTGTGGTTTTGAATTTGGAAAGTTTAGAAGGGCTACATGGATCATACATGGCTAAAAGTATCCCACGTCATTATTAAAGTCTAAGTGATAATATGTTTAGAAGGTTAGGCAGAGTAATGGATTAGCAAGCGGAACAAAACTAAAAAAACAACCGGGTCAATATGGATTCCTAAAACTGTCAGTGACAGCCCATTATACTTTATCAGAGTCAGGAATTCATTCCATGGTCAAAAGCTTACATTTCACTTTGTGAAAAGTGAACTGAAACTTTTGTAATTGCATTCAGGGCACATAAGACAATTAAACAACTATATACAATTGAATATGGAGGCTGTTACAAATTAGTGCTCTATGGAAAGGTAATAGTATCGATGAACTGCAGTTCTGACCAGATATAAAATGTTAAAATAGGAGGAAATCTGTAAATATAATCTAAACCTTTCCACGAACCAGGTTGTAGGCCAAACATTTCTGAAGACATGGGGTAAAAACACAGTTAAGCATCTTGTGAGCCAATCGAAAACGTTAAACGATTAAGATGGAAGTGTGAACACAAAATTGCTTGATGACTGCAAACAGCAccagaaaaaaacacatttctatgACATGACTGAGTTCATTGGATAATTGAACACAATCAGTGAGGCAGGAGGTCTTTTCTATGTCCATTGTCCAACTTGTCTTTTTACATTTAGTTAGTGGGAGGATTTTGAGGGTGGGGAAAGACTTATGGTCCAGCAGCATGAGTCTTTTGATGTTCCTCTAGAAGATGTGGGAAAGCAAACGCTTTGTCACACTCTGTGCATTCATATACAACTTGTCCAACATGACTTTCTTGATGCTGCCTGAGAAGAGACAGTTGACTGAATGATTTATAGCACATGTCACAACGGTGGTCTCCTCCAGATTCCTGTTCTGTGTGCACTTTCATATGCAATGACAGGTCGTGTGCCGAGGTTAATGTTTTGGGGCAAACTGAGCACTTGTACTGGCTTACACTGTCCGTGGCTTTGTATGTCGGGTGGGCTCGTTCAGTGCCAAACTTATGTTGTCTTCGCTCATGGTCTCTGAGATATCTCTTCAGAGCAAAGGTCTTTCCACAAGACTGGCACTTGAATGGCCGTTCATTGTGATGCTCTTTGTTTAGATGCTGCTGGAGACTACCGCGAGAAGAGAATCGCATTAAGCAGACAGTACAATTAAAGAAGTCCTCCCCAAcatccacctcttcctccattgACTTTCTATTAGACAGATGTGGGAGTTCATGGGCTGTCACAGCACATTGCCGACGTGCACAGTGGTGGTGGGGGAAATCACTGCCCAAGAAGCTCTGACCACACTCCGTGCACTCGTATTGTGTTGCAGCAGTCAGATGGCTTCGCTCATGTTCAGCAAGCTTGCTTTTGGTGGGAAATGTCAACTTACAAACACTGCAAGCAAACGTGTTCTCAGAGTGTATGGAAAGGTGACTTGCCAATTCTATGGCATGAGCAAACATGTGAGAGCAAATTGGGCATTTGTAAATGGTTCTTTTCTCTGAAACAGTTTCCCAAGCatttgtcactgagtctcctttCAGAGCTTCTGCTGCAGCCTCATCGTCACCGTGTTCATTTAAATGACTGACAAAATTGTGACGATAGTTGAAACTCATGTGGCATTGATTGCACCGATACACGTATGATTGTGGTATTTGGTAGTGACTGAGCTCGTGCTTGTTTAAGTGAGATGCATGCAAGAAATGCTTATTACATTCTTGGCATGAATAAGGTCGCTCTCTGGCAGCCAGGCACCCATGCTCAGACAGTTGTTCGGGTTCTTTGAAACGTTCATCGCAAACCCCACAACGATATTGAAGGTGCTTCatagtagaggaagaggcagTAGAAGAGGAGGATGCAGTCTTCTCTGGAGGAAGTAAAGGTGGTGGAACATCCTCTGTCTCAATGTGGATTTTCCGGTGCTCTGCCCGACTCATCTTGCAGGAGAATGTGCGATCACATATATCACAAGGGAAATTGTCATCGCGGTGGGTGCCCATGTGCTCTGCCAGCTGCGAGGGCCCTGTGAAGCTGAGCGGGCACTTGGAGCAACGGTGTTGACGGCTCTTTCCATGAGTATGCTTGTGTTTGCGTAAGGCAAAGAGTGAGACAAAACCTCTGCCACATATTTGACACTGATACTCAGACTTGTGGCTCCGAAGGTGCTGTTGCAGTTGCCCTGCCTGGAAAAAACATTTGCCACATTCTGCACACTCATGAGGTTTTTCACCGAGGTGACAGCGTTGGTGATCCTCAAGGCTTTCTGATGTGGTGAACGTTTTCCCACAGACATGGCAGGGGAAGTAGTCTGCAGAGTCAGAGTCATTGTCCTCATTAGCATCATTTTCATCTTCATCATTACTTCCTCCATCCACATCAACTTCCATGTCAAATTCCTCTTGCACTGCTGTCTCCTTTTCCTTCACGTGGATAACATCCATGTTCTTATGGGTTTGATGCTTCATCCTAATATGTTTAACAAGTGAACTTCTGATTGAATAGTTCTTGTTACAGACATGGCATGTATAAATTCGTTCTTTTGAATGAGCTTGGCTTTGATGGTTTTCTAAAGATTGACTGGTCCAAAACCTTTGTTGACACTCTTTGCAGACAAATGGTCTATTTGAGTCATGACAAGTTCTATGGATGTCAAGGTCAGAAGGGCAGGGAAAAGTCTGTGGACATTGTGGACAAGAAAAGGTCTTCTCATTCCAGTGGCCTCTCATATGCCTTGCTAGGTCTGAAGGATTAGCAAACGTCTTACCACAAGGCTGGCAGAATTTCTTTTTTCTTTCTAGCTCCTCGCGCCCATGGTCCTCTAAATGGCTGATGAGCAGAAGCCCATCTGTGAAACTCCTATCACATTCTGAGCACTGGTACTTGTTGCCTGGGACTTGTTGACCACTATTTATTCTATCATTGGAAGATCTTCCTTTGCCTTGATTTCCAGAGGCACTCTGTAGTGTTAAATCCTTCATGTCATCTTTGCAGGAGAAATTAGTCTGCAAAACCCCAGTGCCTGTTGTTTTGTAACCTTGGTTGAAGACTAGGACAGTCTCTTTAAGAGTAGGATCCATCTCTGAAGTAATTACAGAGTCAGTGTTAACTTCTTCTTTCGTGACCTTTACAAGTCTACATTTCCTTACATGTGTCCGACATAAGTTTTTGTTCCAAAAGCCTTTACTGCATTTCTTGCAGTTGAATGGGTACTGTCCTAAATGTGTACGCATGTGTCTGGCAAATCCACCCTTATTTCCAAAGTTCATGTTGCACTGTGGACACTTAATGGGTTTGTTCATATCATTATTTCGATCACTGTCTTGATCAAGCATGAGATTGTTATCACTATTCTGCCGAGTGTCACCATATCCTTCATCCAAAGACTCCTCTTTTATGTTCTTCATAGTAGACAACTGCTCCTGTAGAGGTGAAGCCTGATTTGTTGGAGCGTCTCTATGCGTGTTGAGAAAGTGTTGCTGGAGCTGAGAGAACAACAAGAAGCGGGCACTGCAATTAgcacaggagaacccttttggtggACTGCCAGCAGTGGACTCAGTTCGACTACGGGCAGGTGATTTACACTTGACAACACATGTCAGTTGATGGTTCTCGAGTTCATCTTGCGAAAATACGTCGCCACATCTGTCACAAAGCACTCTGTCAAGAGGTTCCCCTTTGCACCTGTTCAAATGGCGCTGCAGGTAGTCCCTACGGATAAATCTCTCACCACAATTAGAACATCCAAAAGGTTTCTCCCCTGTATGCAAGCGGGTGTGCACCCTCAATTGCTCACCACTTTTGAAAAGGCGAGGgcaaaaagtacatttgaatttGCGTTTGTCTTTATATTGCAGCTGGATCCTCTGTAGAAGTCGGTTTGTCTCTCTTGATGGTGGGCTTGTAACATTTAGCTTTTCTGAATGCTTTGTTTTTGCATAAATTCTTTGACATGCACCAATGTTTATATGTCTCTTAAGCGATTTTTCATGAGTAAATGAACTGACGGTTCTTATAGCATGTGACATGGCAATATGTCGGGCCATAATGCTGTGAGAGGGGAAGATCTTTGAACATATGCTGCAGTCAAACCCTTGTTGCTTTCCTGAAACAGTAATGTTCAGGTTATTTTGCCAGCCCATTCCAACATCTGCCAGACTAATTTTGGCAATGCGAACTTCTAAACGTTGTCTTTTCCCTTTGCAGCGACTCTGGTGCAGTTTTAGATGATCATGTCTGGAGAAACAGCTGTCACAGGCCTTACAGCGATATGGCTTTACCTCTGTGTGCGTTAGGATGTGCCGCCTTAAGTTTCGGGATTTCATGAAGATTTTTGTGCAGATATTGCACTTATATTCACCAAGGCTGGCGCTTGGTGGCTTTTGTCTATTAACACCATCACAGAAAGCTTCATGCTGTAAGCATCGTGACTGGATTCCATAGCTGTGACCACAGTGCATGCATGGATATGATCTTTCTCCAGTGTGTGACCCAATATGTCTCAGGAGAAAACTTCTGTACTTGAACTTGCTTGGACAGTGGGGGCATTTGTGCTGCAACTTTTCCCTGCTACTGGTCCCAATTTCTATGGTGTTGTTTTGCAAGGGCTTGGCAGAGTTGCAAGTCTTCTCATGAAAATTACGATTATCACTCCTTGTAAAGTACTTTCCACAATTCCTGCAAGGATGGATGTTTGAGTTGCCAGAAAAGCTGGTGTTTTTTTGCAAGGGCTTTACAGAGTGGCAAATCCTCTCATGGACATCTCGATTATAATCCCTTGAAAACTTCCTCCCACAATTCCTACAAGGATGCCAGACAGTGCTCACTGGCTCTATAGATTTTATGTTTGAG

Function

NR:

description
uncharacterized protein LOC110510400

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258444 True 5126 lncRNA 0.40 1 14047961 14053086

Neighbor

gene id symbol gene type direction distance location
LOC110503682 trp-iii coding upstream 44011 14001152 ~ 14003950 (+)
LOC110510221 LOC106577525 coding upstream 506635 13539000 ~ 13541326 (+)
apoa2 apoa2 coding upstream 515275 13529662 ~ 13532686 (+)
LOC110510206 LOC106577511 coding upstream 527928 13517648 ~ 13520035 (+)
apoe LOC106605689 coding upstream 536065 13504087 ~ 13511896 (+)
LOC110510707 LOC106593417 coding downstream 20314 14073400 ~ 14075519 (+)
LOC110510523 LOC106573797 coding downstream 87200 14140286 ~ 14152666 (+)
LOC110510755 LOC106561134 coding downstream 151821 14204907 ~ 14219816 (+)
LOC110510617 LOC106578046 coding downstream 173739 14226825 ~ 14268614 (+)
LOC110510822 smg9 coding downstream 225264 14278350 ~ 14284963 (+)
G225919 NA non-coding upstream 1378 14046296 ~ 14046583 (+)
G225858 si:ch211-261d7.3 non-coding upstream 50084 13997117 ~ 13997877 (+)
G225856 LOC106605595 non-coding upstream 50985 13996568 ~ 13996976 (+)
G225855 LOC106578138 non-coding upstream 51623 13993200 ~ 13996338 (+)
G225857 NA non-coding upstream 59926 13986669 ~ 13988035 (+)
G225931 NA non-coding downstream 16556 14069642 ~ 14126977 (+)
G225958 NA non-coding downstream 68649 14121735 ~ 14128708 (+)
G225962 NA non-coding downstream 78448 14131534 ~ 14131772 (+)
G225965 NA non-coding downstream 81829 14134915 ~ 14135217 (+)
G225920 NA other upstream 1113 14046586 ~ 14046848 (+)
G225859 LOC106605594 other upstream 55940 13990236 ~ 13992021 (+)
G225710 NA other upstream 401950 13645569 ~ 13646011 (+)
G225672 NA other upstream 497379 13550098 ~ 13550582 (+)
G226807 LOC106578340 other downstream 336391 14389198 ~ 14390428 (+)
G226791 NA other downstream 355786 14408872 ~ 14410081 (+)
G226941 NA other downstream 650515 14703601 ~ 14703975 (+)
LOC118944476 LOC106605624 other downstream 889064 14942150 ~ 14984145 (+)

Expression


Co-expression Network