XLOC_021887



Basic Information


Item Value
gene id XLOC_021887
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37026350 ~ 37038409 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00044877
ggaaaacaaagcacaaaggcagaacatttcatagACTGCTGACTCAACAGTCAccataaaaaagaagaaaaaagaagctTTGATCTGCAAAAGTCGGAGAGAAGGCTTTGGGGAACAGCGACAGGAGAATGGCGAGTCTCCGCATATTTGAAGAAGCTCTAATTTTAACAGCCGTAACACAGAGCAGAGGAGGATTCGCACGTGAGACGCAGCTGGAGGCAGAAACAGACACAGACACATGTGCTCTGGTGTCCTCGCCAAGACTGAAGCCATGACTGCTGGTGTCCCGAGGCCCAAAATCAGCATTTCGCTCAGGATGAAATGGAGAAACTACGTGCTGTTTAGTCATAGGAAGATCTGACTGAAGGCTGTGTGTGACACTCAAATGATGAACCCAAGTTGGAGGCACAAGACTTTGGTTGACACAACTTGCATGACCCGGTTTGACATGATTCATGATCCTGTTT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00044877 True 467 lncRNA 0.47 2 37026350 37038409

Neighbor


gene id symbol gene type direction distance location
XLOC_021886 CR926464.1 coding upstream 130981 36891729 ~ 36895369 (+)
XLOC_021885 NA coding upstream 180370 36842632 ~ 36845980 (+)
XLOC_021883 march9 coding upstream 227730 36771593 ~ 36798620 (+)
XLOC_021884 dre-mir-2191 coding upstream 236018 36790223 ~ 36790332 (+)
XLOC_021882 tspan31 coding upstream 276049 36730713 ~ 36750301 (+)
XLOC_021888 cptp coding downstream 47750 37086159 ~ 37094205 (+)
XLOC_021889 NA coding downstream 74878 37113287 ~ 37118114 (+)
XLOC_021890 vwa5b1 coding downstream 146838 37185247 ~ 37198890 (+)
XLOC_021891 NA coding downstream 188772 37227181 ~ 37433229 (+)
XLOC_021892 NA coding downstream 248005 37286414 ~ 37287626 (+)
XLOC_021878 NA non-coding upstream 440599 36585179 ~ 36585751 (+)
XLOC_021877 FO704757.1 non-coding upstream 535116 36491114 ~ 36491234 (+)
XLOC_021894 AL954146.2 non-coding downstream 400425 37438834 ~ 37438950 (+)
XLOC_021899 AL954146.3 non-coding downstream 454326 37492735 ~ 37492851 (+)

Expression



Co-expression Network