G226738 (LOC106578046)


Basic Information

Item Value
gene id G226738
gene name LOC106578046
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14241717 ~ 14242202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU259355
gtgagcatgagtGTGTGCCAGCATGTGCACGCCCCTCTACCCTACCTCTCACACAGCGTGAGCATCCAGGAGGCGATGAGCCAGAACAAGAAGATGAACACCATCAGCGTGCGCGCCGGGTACTTGTTCATCAGCACCTTGAGCACGAAGCGGAACGTGAAGTTGATGTTGTTGAGCGAGCCGATACTCCTATAGGAGGCACTGAGCAGCACCTTGCTGTGCAGTAGGATCGTCCTGTGGACCAGGTACAGCCTGAGGAACATCAGTGCCGACAGTAGCAGCTCTGTGTCCAACAGCACCTCCCCGTGGCGGGAGGACACACACAGCGGCGCCGAGTTGGAGGAGTTGACCTCTACCCCCTCCCTGGCGATGGGTGCAGGGATGCCCACCTCCCAGTAGGTGCCCACAGGATGGATGGCACAGACCAGCAGCTCCAGGGAGATGCCCAGCACCCTGCGGCTTGTCATGGCGATGcgccagtccacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259355 True 486 lncRNA 0.41 1 14241717 14242202

Neighbor

gene id symbol gene type direction distance location
LOC110510806 LOC106578077 coding downstream 49411 14148137 ~ 14192306 (-)
fpr1 LOC106605601 coding downstream 139436 14099401 ~ 14102281 (-)
LOC110510492 LOC106578091 coding downstream 145613 14084118 ~ 14096104 (-)
LOC110510454 LOC106595663 coding downstream 162732 14026102 ~ 14078985 (-)
LOC110538195 LOC106578103 coding downstream 218564 13995196 ~ 14023153 (-)
si:dkey-79d12.4 LOC106605603 coding upstream 28451 14270653 ~ 14279142 (-)
LOC110510581 LOC106578340 coding upstream 146996 14389198 ~ 14397283 (-)
LOC110510742 LOC106578317 coding upstream 233480 14475682 ~ 14481655 (-)
antol lin37 coding upstream 266204 14508406 ~ 14511632 (-)
psenen LOC106577931 coding upstream 276995 14519197 ~ 14524902 (-)
G226737 NA non-coding downstream 343 14241125 ~ 14241374 (-)
G226736 NA non-coding downstream 1448 14240003 ~ 14240269 (-)
G226731 NA non-coding downstream 8327 14233164 ~ 14233390 (-)
G226689 NA non-coding downstream 19355 14222129 ~ 14222362 (-)
G226679 NA non-coding downstream 21937 14219212 ~ 14219780 (-)
G226739 NA non-coding upstream 3394 14245596 ~ 14245804 (-)
G226743 NA non-coding upstream 6436 14248638 ~ 14248888 (-)
G226746 NA non-coding upstream 11543 14253745 ~ 14254330 (-)
G226748 NA non-coding upstream 12930 14255132 ~ 14255352 (-)
G226749 NA non-coding upstream 13202 14255404 ~ 14255640 (-)
wu:fe05a04 LOC106578221 other downstream 313884 13909746 ~ 13927861 (-)
G226294 LOC100136012 other downstream 897342 13344074 ~ 13344375 (-)
G226224 NA other downstream 1017202 13223884 ~ 13224515 (-)
G226187 NA other downstream 1061445 13177178 ~ 13180272 (-)
G227060 NA other upstream 186591 14428793 ~ 14475166 (-)
LOC110503689 tm149 other upstream 356587 14598789 ~ 14638314 (-)
LOC110512327 LOC106578554 other upstream 1294163 15536363 ~ 15539677 (-)
G228094 NA other upstream 1358813 15601015 ~ 15601488 (-)

Expression


Co-expression Network