G226889 (LOC106577926)


Basic Information

Item Value
gene id G226889
gene name LOC106577926
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14618940 ~ 14623217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU259531
ATTTCAAGTTTCCGGTCTGGACTTTGTCCCTGGGGCTCCACTTGTTCTTGAAAGGTGTGATCCTCCCTCCCCCAGCACTTGTTTCACTGAGCTGGTCCCTGTCCAGGTTGATGCTCCCATGGAAACCCATCAGCCTCAAGACCCAAAAGACCTCTTCTTGGATTCTAACAGCGGCCAGTTTGTATCGCCCACAGATGGATCTGCCATTTACATGAACCACTTGACAGAGAGTTCATGAGATCCCTCGTTGAGCAGTAGTCAGGGCACCCTGTTGGAGCTTCTTCAACCCTCTTCTCTTATCTCCTCGGACTTCCCTAACCCCAGCG

Function

NR:

description
histone-lysine N-methyltransferase 2A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259531 True 326 lncRNA 0.43 2 14618940 14623217

Neighbor

gene id symbol gene type direction distance location
LOC110510370 LOC106605615 coding upstream 17331 14525705 ~ 14601609 (+)
proser3 LOC106577938 coding upstream 99228 14511659 ~ 14519712 (+)
si:dkey-42l23.2 cml1 coding upstream 110814 14506201 ~ 14508126 (+)
LOC110510788 ctrl coding upstream 117161 14500459 ~ 14501779 (+)
LOC110510592 hsp70-3 coding upstream 120309 14495344 ~ 14498631 (+)
LOC110503699 NA coding downstream 5667 14628884 ~ 14631162 (+)
LOC110510471 LOC106577854 coding downstream 120504 14743721 ~ 14777153 (+)
LOC110510982 NA coding downstream 296382 14919599 ~ 14941872 (+)
LOC118944476 LOC106605624 coding downstream 319890 14942150 ~ 14984145 (+)
LOC110510950 LOC106605624 coding downstream 361554 14984771 ~ 14991394 (+)
G226845 LOC107675859 non-coding upstream 94426 14523181 ~ 14524514 (+)
LOC110510729 LOC106578340 non-coding upstream 148677 14468093 ~ 14471031 (+)
G226807 LOC106578340 non-coding upstream 229099 14389198 ~ 14390428 (+)
G226797 NA non-coding upstream 247862 14367459 ~ 14371078 (+)
G226793 NA non-coding upstream 258162 14360504 ~ 14360778 (+)
G226931 NA non-coding downstream 62987 14686204 ~ 14686513 (+)
G226935 NA non-coding downstream 66433 14689650 ~ 14689945 (+)
G226902 NA non-coding downstream 71399 14694616 ~ 14747965 (+)
G227323 NA non-coding downstream 266161 14889378 ~ 14889745 (+)
G227333 NA non-coding downstream 272816 14896033 ~ 14896321 (+)
G226791 NA other upstream 208859 14408872 ~ 14410081 (+)
LOC110510822 smg9 other upstream 339085 14278350 ~ 14284963 (+)
G225920 NA other upstream 572092 14046586 ~ 14046848 (+)
LOC110503682 trp-iii other upstream 615014 14001152 ~ 14003950 (+)
G226941 NA other downstream 80384 14703601 ~ 14703975 (+)
G227405 NA other downstream 373942 14997159 ~ 14998075 (+)
LOC110511049 LOC106605627 other downstream 449927 15072005 ~ 15095913 (+)

Expression


Co-expression Network