G226902


Basic Information

Item Value
gene id G226902
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14694616 ~ 14747965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU259551
TGTTTCAAATTTTATTACAGTTTTAATTAGCTTAATCAGATCTCCATTGCTCAGATTTCTTGCACATGAATTACACTCAACATAGCTCAGGGACAATTGGTCAAATTAGTCAGTTGTCTGACCTCTTCTAGAGCAAAGCATGTGTTTGGTCAAGTTCTGAAGGGATTTGAAGATCAGCTCCCTCAGTGATGTCATCAGTATCTTTCCAATCAGAGTACAGTCAAAATGGTGGGAGTTCACATTATATACAGCCAGTATCTGTGTCTGACAAAGAGCAATCATTTGTTCACAGTTGTGCTTGGCGCCACACCATGGACAATTTAGTTATAGACTTACTGACAGAGTATGTCCACTGTATCTGAACTGTTAGACATCACATAACCTCTTTAGGGTGCCTATAGGTATTCTTATACAAGCTACTACATTTTTCATACAGTGAGAAAACATGACCCTCAATCCAATTGATTATTAGAAATAAAAATACAGAATTACATCCAAAACACAGCATTGTAAAAGGCAATaatgcagcaattaaactctcCATATAATTGTTTACATTTTCATTGgctggggaggggaggaaggcCAACATAGAAGTATCTTAATCAAGAGAGGACATACAAATGTGTGTTCAGTCACTACACTATACACCATTCTACATCTGCTAAATGCTGGTAGGAAAACCTTGAGTCTTTGGGGAAACATAGGCAAGCTTATTCTCTTCTATGGTTTCAGTAGTATCGATACAAGGTTCAACTGACTTAAACTGTGAACATACGTTTTTCACGAAACAGAGCTGTACAAATTATACAAAGACTACCTCAGCTCTCTAATTATCTTGATGCAGTAACCACAACCTGTGATTCCCACAATCCAAAAGCAATACATGGACAATTCAAATCTCTGAGGTCAAGTATTTGAACTCATCTTCCCCATATTCAAAGCAGTGtttgaataaaaaaaacagaatggTTTGAGGGTGAGTCAGCCACATCTCTCCTCTGATGTGATCAATAATTTACTCCCTTGTGTCACCAGTGGTTTCATGGAGTACACAGCAGAACAACCTAGCCATAAGTTACAAATAAATTATGAACCTCTCAGGATGTTTCAGGACTGGTGATGTTTTAAAAAGTAACATTTTCAGAATTCTGAGAGTAGTGAAAGATGATTGGTTTTGGTTAGGatcatctgtagtacagtagGCCAACAGTAGTTGCAGTTGACACTGTTGATTATGAAGAAACCTCCTACTGTGTATGTAACCATCCAACACGAAGAACTCTCTCTGGTAACAAAATCATGTAGtggaaaataaattaaatataaaAGCCATCCAAGAGGTCAACAATCAGCCATTGAAAAGGGGACAATCCCTTAttatctatatacagtgcatgATATTGATCATAATAACTGTGACAGATGCATCAGTGAGATGCGACATCTCCCTAGTGGACTAACATTCAACTGGTTTATATACAGCGTCTATATGTTCATCCTGCCTGAAACCTGCTATGTCCCTAATAAAGATTCAACTTGAATTTGAAGCAATAAACTGAAAATAACTCACTAAGGTGTGCTAGAGCAAATATTGTGGTCCCACCCAATCTGAGCAATAGTCCAGTCCTCGGCATACCTCCTTTACATGCAACTGTTACCCAATATCACCATGTTTGACAACATCACTATGTTCCCTAATGCTGAAGTCCATTGCACCACAATAATGAATGACATCCCACTGTTCTCATTCAGACCTGCAAATAGTGAAAAGAGACATCCAGTGTTAAACTACAGTGAGATAATGAGGAAGGTTTTGGACATGTAGCTTGTCTACTGATTACAGGTTTGTCCTTGGGATTCTACTAGGGGAGTGATGCACTATCGAAGAGGAAATGGAGTCTCAACGTCTACCTAAAATACATTCAGTCAGAAGTTAATTGTGTCATCTTGTGCTGGTTTTTTACAACAGTCCGTTTTCAATCAGCCATGTTAGGAAAATGTTCTCTCTCTGAACAGCACAAGGTATTCTTCTTTTTTGTTATTATTCCATTACACTGATGCAAATTCATTCTAGAAATGTCTATTTTGAAGTCATATTTTTTTCTAAAGATATTACATTTCCATCTTATCAAAAGCAAAGAACAGGAACGACACAAAGACGGTAGCATCATACACCAAATCTGCATGCTTTCATTAAAATAATGGACTTTTCATTACTTTGTTACAATTTTTTTAGGTAGCAGTCATTCACTTAACTTAAATGGTACATTTGGTACATTAGTTCAATTATATAGTTCACATGACATGGAATAGGCTCTGGGTGCTGATTGTGTCAGATGTCACAGACTGAAGGATGAGGTTGGGCTGAACATCAAAAGACCACCAACCCATGTTACTATGGATTGATAATATATGTTGGTGTGAGTAATACCTAAGTAACAACTAAGTCAATCAAGCTTCAACACCTCACATTCCCAACCTCCTCATCTCTGCTTAACCTTTACAACTGTGCCTGCCTTTGAAAGAAGATGTCCTTCATTGACTCATGGAGGTGGGGCTGGCTTGGTGGTCATCATGTCAGAGTCAGTGTAGCTTTAGATAGAGAACCAGTTTGTGTGGAGTTTTAGATCAGCTATACTATATTGTTTGTTCACATTTTACACCATTTATCTGAACTGGAATATAATGAATCAGAGCTGTAACACAATCCAATAAAGAATAAACAGATGACATACAAAACAAAATGCAGTGTTCAATATTGAGTCAGTTTCTGACAAATACCAATCCATTTTATTAAGAATAAGGGGGTCAACTCAAGCCATTCCAATGGCATTCCTATCCAAGTAGACAGGAGTGAATCTCtccaaaggagatgattgttacACTGTGGCATTAATGTCCACCCCTTTATTCTAGACCAGAAGAGTAAGAGGATGGGTCAGTTGGTAATACGTCTCTGTTACTGGTTTACATTCCAAAACTGATGTGGGGACATGGTTGGTCAGAGGATTGGGGCGTATACCCCCTATTTGCTTGTCAAGTTACATTAAAGTGTTGGTCGTAATGATACATCTTAATACATCATAGGGGGTGTGACTGGGACTGCCCCTAGGAGGGGAAGCAAGGAAAGGGAGCGCCTCGTGTGATTGGGCATGACCGGGAGGCCACACCCACCGCTTCAGTTCATTTGCTCAAAGAATTTGTAGGTGGGGTTTTCGTAGCCGTGGTTCTGCATCTTGTTTAGTTGGCGCTCCTCTGGGGTCAGCATGGGGTCAACCttgaaaacaaatga
>TU259552
TGTTTCAAATTTTATTACAGTTTTAATTAGCTTAATCAGATCTCCATTGCTCAGATTTCTTGCACATGAATTACACTCAACATAGCTCAGGGACAATTGGTCAAATTAGTCAGTTGTCTGACCTCTTCTAGAGCAAAGCATGTGTTTGGTCAAGTTCTGAAGGGATTTGAAGATCAGCTCCCTCAGTGATGTCATCAGTATCTTTCCAATCAGAGTACAGTCAAAATGGTGGGAGTTCACATTATATACAGCCAGTATCTGTGTCTGACAAAGAGCAATCATTTGTTCACAGTTGTGCTTGGCGCCACACCATGGACAATTTAGTTATAGACTTACTGACAGAGTATGTCCACTGTATCTGAACTGTTAGACATCACATAACCTCTTTAGGGTGCCTATAGGTATTCTTATACAAGCTACTACATTTTTCATACAGTGAGAAAACATGACCCTCAATCCAATTGATTATTAGAAATAAAAATACAGAATTACATCCAAAACACAGCATTGTAAAAGGCAATaatgcagcaattaaactctcCATATAATTGTTTACATTTTCATTGgctggggaggggaggaaggcCAACATAGAAGTATCTTAATCAAGAGAGGACATACAAATGTGTGTTCAGTCACTACACTATACACCATTCTACATCTGCTAAATGCTGGTAGGAAAACCTTGAGTCTTTGGGGAAACATAGGCAAGCTTATTCTCTTCTATGGTTTCAGTAGTATCGATACAAGGTTCAACTGACTTAAACTGTGAACATACGTTTTTCACGAAACAGAGCTGTACAAATTATACAAAGACTACCTCAGCTCTCTAATTATCTTGATGCAGTAACCACAACCTGTGATTCCCACAATCCAAAAGCAATACATGGACAATTCAAATCTCTGAGGTCAAGTATTTGAACTCATCTTCCCCATATTCAAAGCAGTGtttgaataaaaaaaacagaatggTTTGAGGGTGAGTCAGCCACATCTCTCCTCTGATGTGATCAATAATTTACTCCCTTGTGTCACCAGTGGTTTCATGGAGTACACAGCAGAACAACCTAGCCATAAGTTACAAATAAATTATGAACCTCTCAGGATGTTTCAGGACTGGTGATGTTTTAAAAAGTAACATTTTCAGAATTCTGAGAGTAGTGAAAGATGATTGGTTTTGGTTAGGatcatctgtagtacagtagGCCAACAGTAGTTGCAGTTGACACTGTTGATTATGAAGAAACCTCCTACTGTGTATGTAACCATCCAACACGAAGAACTCTCTCTGGTAACAAAATCATGTAGtggaaaataaattaaatataaaAGCCATCCAAGAGGTCAACAATCAGCCATTGAAAAGGGGACAATCCCTTAttatctatatacagtgcatgATATTGATCATAATAACTGTGACAGATGCATCAGTGAGATGCGACATCTCCCTAGTGGACTAACATTCAACTGGTTTATATACAGCGTCTATATGTTCATCCTGCCTGAAACCTGCTATGTCCCTAATAAAGATTCAACTTGAATTTGAAGCAATAAACTGAAAATAACTCACTAAGGTGTGCTAGAGCAAATATTGTGGTCCCACCCAATCTGAGCAATAGTCCAGTCCTCGGCATACCTCCTTTACATGCAACTGTTACCCAATATCACCATGTTTGACAACATCACTATGTTCCCTAATGCTGAAGTCCATTGCACCACAATAATGAATGACATCCCACTGTTCTCATTCAGACCTGCAAATAGTGAAAAGAGACATCCAGTGTTAAACTACAGTGAGATAATGAGGAAGGTTTTGGACATGTAGCTTGTCTACTGATTACAGGTTTGTCCTTGGGATTCTACTAGGGGAGTGATGCACTATCGAAGAGGAAATGGAGTCTCAACGTCTACCTAAAATACATTCAGTCAGAAGTTAATTGTGTCATCTTGTGCTGGTTTTTTACAACAGTCCGTTTTCAATCAGCCATGTTAGGAAAATGTTCTCTCTCTGAACAGCACAAGGTATTCTTCTTTTTTGTTATTATTCCATTACACTGATGCAAATTCATTCTAGAAATGTCTATTTTGAAGTCATATTTTTTTCTAAAGATATTACATTTCCATCTTATCAAAAGCAAAGAACAGGAACGACACAAAGACGGTAGCATCATACACCAAATCTGCATGCTTTCATTAAAATAATGGACTTTTCATTACTTTGTTACAATTTTTTTAGGGTAGCAGTCAGGACAGGACAGCCAGAACAAGACAGGACAGCAGCTGCATCTCCTTTCCTCCTCGATTTGAGTGTGGTGAATCAGCCGCCCTACGTATAACTGGCTGACAGACAGCCGGTGCTTTGAACTGGGTATCTTACCAGTGTGAAATTATTAATCCACCTTTGGAACTGACCACTTTTCATCCCAGGTTATTGGAGATTAGGGAATATGCGTgagattggatttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259551 False 3295 lncRNA 0.39 2 14694616 14747965
TU259552 True 2475 lncRNA 0.38 2 14694616 14726625

Neighbor

gene id symbol gene type direction distance location
LOC110503699 NA coding upstream 63454 14628884 ~ 14631162 (+)
LOC110510370 LOC106605615 coding upstream 93007 14525705 ~ 14601609 (+)
proser3 LOC106577938 coding upstream 174904 14511659 ~ 14519712 (+)
si:dkey-42l23.2 cml1 coding upstream 186490 14506201 ~ 14508126 (+)
LOC110510788 ctrl coding upstream 192837 14500459 ~ 14501779 (+)
LOC110510982 NA coding downstream 171634 14919599 ~ 14941872 (+)
LOC118944476 LOC106605624 coding downstream 195142 14942150 ~ 14984145 (+)
LOC110510950 LOC106605624 coding downstream 236806 14984771 ~ 14991394 (+)
LOC110510993 fxyd5a coding downstream 250711 14998676 ~ 15022578 (+)
LOC110511152 NA coding downstream 307865 15055830 ~ 15061264 (+)
G226935 NA non-coding upstream 4671 14689650 ~ 14689945 (+)
G226931 NA non-coding upstream 8103 14686204 ~ 14686513 (+)
G226889 LOC106577926 non-coding upstream 71399 14618940 ~ 14623217 (+)
G226845 LOC107675859 non-coding upstream 170102 14523181 ~ 14524514 (+)
LOC110510729 LOC106578340 non-coding upstream 224353 14468093 ~ 14471031 (+)
G227323 NA non-coding downstream 141413 14889378 ~ 14889745 (+)
G227333 NA non-coding downstream 148068 14896033 ~ 14896321 (+)
G227354 NA non-coding downstream 168087 14916052 ~ 14916301 (+)
G227369 NA non-coding downstream 179543 14927508 ~ 14927748 (+)
G226791 NA other upstream 284535 14408872 ~ 14410081 (+)
G226807 LOC106578340 other upstream 304188 14389198 ~ 14390428 (+)
LOC110510822 smg9 other upstream 414761 14278350 ~ 14284963 (+)
G225920 NA other upstream 647768 14046586 ~ 14046848 (+)
LOC110503682 trp-iii other upstream 690690 14001152 ~ 14003950 (+)
G227405 NA other downstream 249194 14997159 ~ 14998075 (+)
LOC110511049 LOC106605627 other downstream 325179 15072005 ~ 15095913 (+)
G227606 NA other downstream 495981 15243946 ~ 15244282 (+)

Expression


Co-expression Network