G227472 (LOC106605624)


Basic Information

Item Value
gene id G227472
gene name LOC106605624
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14990463 ~ 14991406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU260199
TGGAGTTGTGTATCAGTTGGGCCTAGGCCTAGATTATCCATTTTATttgtacagtagagtataatCAACTGTTACTAGAAAATATGTACGAAAAACTCTGCATGTTTAGTTGCTTCATCTTTTACATTTTATATCTTTGAGGTCTTTGGATCGATGGTAGGCCTAATTTGTATTGATTGACTGTCCCACAATATCacctactgtaaatactgtacctTTTGGTAGTAACAGTTGGAAGGCTTCCTATTCATATTGTACTCAATACCAACACAGCACTAAGAGGTTGTATTTGAGTCTGAGGTATTGTCCACAGTCTGGAATCAAGGCCTAAGCTTCCTAAACTAACTGTCCTCTGAGCTCAAAAGGTAAATCATAGTCGCTTCTCTCTGGGCATCGCTCATCCACCGGATTCTTCCTTCTGATTGGCTGCTGCAGGGCAATCATGTCCCTCCCACTTCCCTGAGGGTAACTGGGTGGGGGTGGTCTCCACTCTCGCCTCTGCTCTGGTAACCAGGGGTCAAACTGGGaaggagacagtgggagagacaACCCCAGCATGTCCTGATACAGCATGTCCTGATACATGCCCCAGTCTCTCACCTCCTCATACTCATGGCCTATGGCCTCCAGTGGGTAGTGGCGGCCATCTTGAAAAAGAGAGCCAAAGAGGTAAGTTAAACAGAGAAATGTCTCTGTCTTTGCTCTTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260199 True 708 lncRNA 0.45 2 14990463 14991406

Neighbor

gene id symbol gene type direction distance location
LOC110510856 LOC106577793 coding downstream 156432 14780067 ~ 14834031 (-)
aplp1 LOC106577862 coding downstream 247564 14694606 ~ 14742899 (-)
zbtb32 LOC106577891 coding downstream 322963 14655864 ~ 14667500 (-)
LOC110510719 LOC106577908 coding downstream 347554 14639769 ~ 14642909 (-)
LOC110503689 tm149 coding downstream 382695 14598789 ~ 14638314 (-)
si:dkey-262k9.2 LOC106577773 coding upstream 32119 15023525 ~ 15040893 (-)
LOC118936618 LOC106605662 coding upstream 110947 15102353 ~ 15109931 (-)
LOC110511165 NA coding upstream 121429 15112835 ~ 15115841 (-)
plm plm coding upstream 167186 15158002 ~ 15171917 (-)
LOC110519917 LOC106577761 coding upstream 193412 15184818 ~ 15204146 (-)
G227340 NA non-coding downstream 90324 14899834 ~ 14900139 (-)
G227331 NA non-coding downstream 95918 14894249 ~ 14894545 (-)
G227207 NA non-coding downstream 275630 14714273 ~ 14714833 (-)
G227476 NA non-coding upstream 5811 14997217 ~ 14998401 (-)
G227438 fxyd5a non-coding upstream 12881 15004287 ~ 15022575 (-)
G227707 NA non-coding upstream 174221 15165627 ~ 15165998 (-)
G227717 LOC105030512 non-coding upstream 202791 15194197 ~ 15216186 (-)
psenen LOC106577931 other downstream 465609 14519197 ~ 14524902 (-)
G227060 NA other downstream 515297 14428793 ~ 14475166 (-)
LOC110538195 LOC106578103 other downstream 988655 13995196 ~ 14023153 (-)
wu:fe05a04 LOC106578221 other downstream 1062630 13909746 ~ 13927861 (-)
LOC110512327 LOC106578554 other upstream 544959 15536363 ~ 15539677 (-)
G228094 NA other upstream 609609 15601015 ~ 15601488 (-)
G228098 fbrl other upstream 714828 15706234 ~ 15708265 (-)
G228191 LOC106578455 other upstream 796216 15762029 ~ 15791401 (-)
G229373 LOC100194703 other upstream 1847983 16839389 ~ 16839839 (-)

Expression


Co-expression Network