XLOC_021893 (fam43b)


Basic Information

Item Value
gene id XLOC_021893
gene name fam43b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37323962 ~ 37325961 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043365
CTTTGCTGTGCTtctctgagaaacacacacacaccagaacgCTCTTCATTGCTGCTTAAGGGAGAGTGCTGAATCCGTTCCACTCTTTCAGGATCATGCTGCCCTGGAAAAGGAGTAAGTTTGTGCTAGTGGAGAATGAGTCCAAAAGCAAGCCGAAAAGTCTTGGAGCTGGGCTAACTTACCATTCGCTGCTGTCGACTTTGCTCCACTCTTGTCCGGATCTCCTTCCCGACTGCCCGTTCCACTGGTTGGGGAGCGTCTTCCACAGCAAACGGCAAAAAGTGGAGCTTAATAAGGAGGAACCCACCTATAATGTGCGTTACCTGGGCAGCGCGGTCACTATTGTGGCTAAAGGCGAGGACTGTACGCAGGAGGCGGTGGCTAAGATTTGGACCCGCAGCAACTATGGCGAACAGAGCGCTAAGATGAAGATAACTGTAGGGCCTCATGGGATACGCATGGGAGTTGATAAAAGTGGCAAAAAGAAGCCTAGTCACCTCTTTTCTCTCAACCGGATCACGTACTGCACTGCTGATCCATTCCGGCCCAAGATATTCGCGTGGATTTACAGGCATCAGGTGAAGAATAAAGCGGTGGTGCTGCGCTGCCATGCTGTCCTATTGGCCAAGGCGGAAAAGGCCAGAGCGCTAGCGCTCAGCCTCTACCAAAACACAACATCTGCGTTCACAGAGTTCAAGAGGCTAAAGCGCCAATCTGACTTCCGTCATTGCCAGCAGCAGCTGCTGGGTGAAGACATCGTGCCTCTTATGCCTCTTCGGAGACTCCTGAATGGCCAATGCCACTACCAGCCACCTGCAGAAAAGCCCGGGAGCGCCACACGACTTTCTTCGATTacagaggaagaggaggatgagGATGAACTGGGGGGTGCCCAATCCACAAACAGCAGtccagagaaagagaaagatgtggGGAAGATTGTAAATAGACTGGATGAGGTTTCAGTTACCAGCTGGGATGAAGCACAGATGACTATCAGCACTCTGGTGTGACATCACATGGATACAATTTAGTGTCCACACCACTGAGCCTCCGTCCTGTCGCCTATCCCGCCAACCCACTCTCTCTGGTACGTCCATTGATGCACCATGAAACAGCCCTCCAAAAATTCGGGAGAATGACAGTCGGGCAGTGTTGCCTACAGAGGAAGCGTTCTAGAGGGAAAGCCAGTAGAAGCACAATACAAGGAGGTCCACAGGTACGCCAATCATTCGGAATTGGTGGAGAGCTTACACCGAAAAGCCTTTATCTATCCCCGACATCAAGCAAAGCTTAAACGGCACACCAAAAGACTGTAAAGCATTCATCTCATACTCACAGCACCTAGTGATATTGTGAGTACATGCCAAGTGCTTTAGACTGATGGACTATGTGAAGGAACTACTTTTTGTACAGCAAGTCTGTCTTTTGATGTTCATAAGTCTGTCCCCCGGTGACCTCTCTCAGGAGCTCTGCTTCAATGGGATGCGGCTAAAGCTGGTTTATTGGCACTGGGAGCAGCACTAATGAATTAAACCATAACTTAGGAATCGAGCCATTgacttgacatgtttactgctaccATTCGTCATAGCTCTGCTAATCAGTAATGCATAGCAAGTGGAGGCATCACCTGTGACGTTTGAAACGGGCCTTTTTAATAGCGTTTTTAAACCGTATCAATTTTACACTGTGATTTTGTCTGGGACCAACGAGAGCAAAGTATATTGTGTTTATACTGACAAGCAGTTGTAATTTATGCTGAATTTGTGTCGGTGTATTGCGTTAGTCATGACAACTCATTTTTATGCCGTTCACGTGAAGGTCGTAGCTTCCATCTGTCAACTCTGGCATGTGTTTTTGTAATTTCAGCGCATCGTATTAATCTTCTGGAAAATGATTGGGAAACATTTTTCTActactttcatttttttctgcacAATAAGACACAGTCAGTGTGAAAAATTGCCATATGTTGTATAATAAAATGTTTGCTTATG

Function

symbol description
fam43b Acts upstream of or within vasculature development. Is expressed in forebrain; somite border; and vasculature. Orthologous to human FAM43B (family with sequence similarity 43 member B).

GO:

id name namespace
GO:0001944 vasculature development biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-11 Acts upstream of or within vasculature development. Is expressed in forebrain; somite border; and vasculature. Orthologous to human FAM43B (family with sequence similarity 43 member B).

Ensembl:

ensembl_id ENSDARG00000070222

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043365 True 2000 mRNA 0.47 1 37323962 37325961

Neighbor

gene id symbol gene type direction distance location
XLOC_021892 NA coding upstream 36336 37286414 ~ 37287626 (+)
XLOC_021890 vwa5b1 coding upstream 125072 37185247 ~ 37198890 (+)
XLOC_021889 NA coding upstream 205848 37113287 ~ 37118114 (+)
XLOC_021888 cptp coding upstream 229757 37086159 ~ 37094205 (+)
XLOC_021887 NA coding upstream 285553 37026350 ~ 37038409 (+)
XLOC_021894 AL954146.2 coding downstream 112873 37438834 ~ 37438950 (+)
XLOC_021895 AL954146.1 coding downstream 118972 37444933 ~ 37453984 (+)
XLOC_021896 cdaa coding downstream 132641 37458602 ~ 37466323 (+)
XLOC_021897 pink1 coding downstream 141006 37466967 ~ 37480785 (+)
XLOC_021898 agmat coding downstream 156766 37482727 ~ 37490249 (+)
XLOC_021886 CR926464.1 non-coding upstream 428593 36891729 ~ 36895369 (+)
XLOC_021885 NA non-coding upstream 477982 36842632 ~ 36845980 (+)
XLOC_021899 AL954146.3 non-coding downstream 166774 37492735 ~ 37492851 (+)
XLOC_021900 NA non-coding downstream 198929 37524890 ~ 37546006 (+)
XLOC_021902 NA non-coding downstream 334717 37660678 ~ 37661442 (+)
XLOC_021903 NA non-coding downstream 396490 37722451 ~ 37724792 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01637015_01638058 FAM43B coding CI01000001 null 1636695 ~ 1638058 (-)