G227534


Basic Information

Item Value
gene id G227534
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15276160 ~ 15277190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU260273
TGATCACATTTgttgtagggggacaaaataaatgtatacacgatagcgcacgatggcgcacatGCGCAGCCGGTTTGTGTTCCGTGTTAGAgtcaccagcctcagaaattgcaggtcaaataaatgcttcacagagttcaagtaacagacacatctcaacatcaactgttcagaggagactgtgtgaatcaggcctttatgatcgaattgctgcaaagaaacctctactaaaggacaccaataagaagaagagacttgcttgggccaaaaaatacaatcaatggacattagaccggtggaaatctctcctttggtctgatgagtccaaatttgagatttgtggttccaatcgctgtgtctttgtgtgacTCCTCCATGATTCCCACCGTGTCATTTTTTGTAATACCTGCAGACCGGCTAGTTTATGTATTTTCAGTGTGTATGGATAAGTCATATCAGAGTTTAAAGACAGATTTGACAATGTTATGAGAATGCAGCAGAAAGAGACTATTCTAAAAGTCTGAAATGACATGTATTACTGGTTGTCATTACACAGAGTGCCAGTGAGGTTACCACTCACAAGAGTAAACATTTTACAACTCAATGTCAAATATTTACTTCTTGTTACACATGTAACAATTTCCTCAATTCTGTGTTCTTTGCTGTCGgcaatgacacaagtaatatctATTTCAACTTATTTTGGAAAACTGTGGAGACTAAGGCTCCATTCAATCTGTAGCATGGAAGGTCCGTTGTATAGCacgattgaaatttaaaggtaatttccgattgactCAGCATATGCAacatttaccgtgaatgcagtctcctcGAACAcaggaacatttatttttttcattttggtACGGATTTAATCTAGCTCTAGAAGTCAAAAGGAATTGCCACGCTGTTCCAGTTTGGCCTTTCAGTTGATTCATTTGGTAAAAATGTCCCCACTATCAATGTCATTTATAGTCACATATTGTCAGATTATGTATAACGCTGTATAGACATATATCTTATTTGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260273 True 1031 lncRNA 0.39 1 15276160 15277190

Neighbor

gene id symbol gene type direction distance location
LOC110519916 LOC106577754 coding upstream 4887 15249894 ~ 15271273 (+)
LOC110519918 LOC106578256 coding upstream 63461 15204527 ~ 15212699 (+)
LOC118944493 LOC106578274 coding upstream 134699 15138558 ~ 15141461 (+)
LOC118944490 LOC106578274 coding upstream 137804 15136772 ~ 15138356 (+)
tyrobp tyrobp coding upstream 143880 15115857 ~ 15132280 (+)
LOC110519929 LOC106577750 coding downstream 5715 15282905 ~ 15298123 (+)
gapdhs LOC106577739 coding downstream 22418 15299608 ~ 15319903 (+)
LOC110519928 LOC106605633 coding downstream 43173 15320363 ~ 15324018 (+)
sult2st3 LOC106577720 coding downstream 51254 15328444 ~ 15332966 (+)
ncam3 nca11 coding downstream 95270 15372460 ~ 15390084 (+)
G227610 NA non-coding upstream 22181 15250931 ~ 15253979 (+)
G227609 NA non-coding upstream 28158 15247776 ~ 15248002 (+)
G227580 NA non-coding upstream 93646 15181871 ~ 15182514 (+)
G227573 NA non-coding upstream 124579 15151348 ~ 15151581 (+)
G227615 NA non-coding downstream 882 15278072 ~ 15278362 (+)
G227619 NA non-coding downstream 4483 15281673 ~ 15281989 (+)
G227629 NA non-coding downstream 32031 15309221 ~ 15310171 (+)
G227800 NA non-coding downstream 114959 15392149 ~ 15392775 (+)
G227606 NA other upstream 31878 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 180247 15072005 ~ 15095913 (+)
G227405 NA other upstream 278085 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 284866 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 301183 14942150 ~ 14984145 (+)
zgc:162160 LOC106605640 other downstream 411153 15672260 ~ 15697397 (+)
LOC118944532 NA other downstream 1236313 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1366161 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1517509 16794699 ~ 16801793 (+)
G230916 NA other downstream 3018164 18295354 ~ 18296105 (+)

Expression


Co-expression Network