G227808 (LOC106578386)


Basic Information

Item Value
gene id G227808
gene name LOC106578386
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15396902 ~ 15441498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU260571
AGAGTTAACATAGATAACTAGACTGTACTGACAGTGCATAGTGGCTTTAGCCCTGTAGGAAAAAGAGTTGTATTCCAGAAAATATATCATCAATACAATCTTTGATCCAAGAACGTAGTACCAACATCTCTGCTGTGCTATCTGACCAGCAGTGGCTGGGCAAATTATTCTTATTGAAGACTGGAAGGTTGTGGAGAAGTACCGATGTCAACATAAAACATCTATTTTGCTGAAATTTCTGTCAAACTTCTGctttttggagagaaaaaaattcaAACGGCCACAACAATATAATAGCTTAACCATCAAACTGATTTCTGTTATTTTGCAATATGACCCACTGGCAAAAACCTATTGAATcgatgttgtttccatgtcatttccaccccccaaaatcaatactatgacattgaatcaacgtgAAGAAcagattggatttgcaaaaagtaatcaatGTAAGGGGATTGTCTTTTTTCAccaaacttttaacctaaatccaatgacatggtgacgtgttgttgatttcacgttgaattcaaaTCAGTTGACAACTCAATACCTCGCAAGTAATAattcaaaactagatgttgaactgacatctgtgcccagtgggcagagGCAGTATATAATATGGCATGGCATATACAAGATTAATATACTCAACCGTTTTGTTTGAATGAATTACTTGAGAGGTTTTGAGTTATCTGACTAAATCAAAACTGTTGTATTTCCAACTAAATGCTTGATAAACAGATGACACAGACTCATTTAGCTGCAATATGTTTATTATTAGGCTTTTGAAAGTTGTAAAGGATAGACAGAGATACACGCGTACAGAGATCATCTCAGTTTTAGTAATACACAACTCTGGGATTATATTTGAATTTTAATGAATATAGAGTTCAATAACAATTTCATGCATGAATACTCATAATCCCTCACAACATTATATAGTTTGGAATATGTTATCAAATACAGAAGGTCATTTTAAGGTAATTTTGCGATTTTATGTTGAAATGCTTTAGCCTACAACCTGGACATAAAAGGAATGTTTTTAAAGGATATTTTAGATCGATGAGATCTTATTTGAAAATTAAAATGTTCTAGCCTCCAAACTTGATATGTACAGGTTTTACATATTTGTTAAGAAGTTTTTCGATCCATGACTGGTTGTTTGAATCTTTGCTGTTGATAATGTAACAGCCCCTGACCCCCTTCACCACCGCACACGTGGTCTTCGGACCGCAGGGCGCCACCTCACAGGCCATCTCGCCGGAGTTACAGCTGCAGCGGTGGTGGCAGTTCTCCTTATAGAAGACCTCGCCGGACACAAAGTAGCGACCCTTGTGGTGACAGCCACAGTTCTTCATGTGGACACACTTGTTATCACTCAGCAGGAAACCAGGTTTGCATTGACAGCCCTCCCCTGGAGGAGTGGTGCATCCTGGGGCGGAGGTCATGGAATAGCATGTGGCCGGGCACCCGGAGGCCGAGAGGCTGTAGACACTGTTCTCTGGACAGGGGAGGTCTG

Function

NR:

description
IgGFc-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260571 True 1531 lncRNA 0.39 2 15396902 15441498

Neighbor

gene id symbol gene type direction distance location
ncam3 nca11 coding upstream 6818 15372460 ~ 15390084 (+)
sult2st3 LOC106577720 coding upstream 63936 15328444 ~ 15332966 (+)
LOC110519928 LOC106605633 coding upstream 72884 15320363 ~ 15324018 (+)
gapdhs LOC106577739 coding upstream 76999 15299608 ~ 15319903 (+)
LOC110519929 LOC106577750 coding upstream 98779 15282905 ~ 15298123 (+)
rbm42 LOC106578518 coding downstream 113252 15554750 ~ 15577801 (+)
arhgap33 LOC106578439 coding downstream 136914 15578412 ~ 15619099 (+)
zmp:0000000951 LOC106578502 coding downstream 191065 15632563 ~ 15636625 (+)
ppox LOC106605668 coding downstream 195238 15636736 ~ 15644078 (+)
zgc:162160 LOC106605640 coding downstream 230762 15672260 ~ 15697397 (+)
G227800 NA non-coding upstream 4127 15392149 ~ 15392775 (+)
G227629 NA non-coding upstream 86731 15309221 ~ 15310171 (+)
G227619 NA non-coding upstream 114913 15281673 ~ 15281989 (+)
G227615 NA non-coding upstream 118540 15278072 ~ 15278362 (+)
G227844 LOC106577653 non-coding downstream 7018 15448516 ~ 15453530 (+)
G227845 LOC106605585 non-coding downstream 13047 15454545 ~ 15459630 (+)
G227846 LOC106577653 non-coding downstream 16410 15457908 ~ 15462932 (+)
G227881 NA non-coding downstream 49867 15491365 ~ 15505385 (+)
G227911 NA non-coding downstream 98838 15540336 ~ 15540824 (+)
G227606 NA other upstream 152620 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 300989 15072005 ~ 15095913 (+)
G227405 NA other upstream 398827 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 405608 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 421925 14942150 ~ 14984145 (+)
LOC118944532 NA other downstream 1072005 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1201853 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1353201 16794699 ~ 16801793 (+)
G230916 NA other downstream 2853856 18295354 ~ 18296105 (+)

Expression


Co-expression Network