Gene
RNA
| Item | Value |
|---|---|
| gene id | G227844 |
| gene name | LOC106577653 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 15448516 ~ 15453530 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: IgGFc-binding protein-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU260616 | False | 319 | lncRNA | 0.52 | 2 | 15448516 | 15453530 |
| TU260618 | True | 319 | lncRNA | 0.36 | 2 | 15448516 | 15453530 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ncam3 | nca11 | coding | upstream | 58432 | 15372460 ~ 15390084 (+) |
| sult2st3 | LOC106577720 | coding | upstream | 115550 | 15328444 ~ 15332966 (+) |
| LOC110519928 | LOC106605633 | coding | upstream | 124498 | 15320363 ~ 15324018 (+) |
| gapdhs | LOC106577739 | coding | upstream | 128613 | 15299608 ~ 15319903 (+) |
| LOC110519929 | LOC106577750 | coding | upstream | 150393 | 15282905 ~ 15298123 (+) |
| rbm42 | LOC106578518 | coding | downstream | 101220 | 15554750 ~ 15577801 (+) |
| arhgap33 | LOC106578439 | coding | downstream | 124882 | 15578412 ~ 15619099 (+) |
| zmp:0000000951 | LOC106578502 | coding | downstream | 179033 | 15632563 ~ 15636625 (+) |
| ppox | LOC106605668 | coding | downstream | 183206 | 15636736 ~ 15644078 (+) |
| zgc:162160 | LOC106605640 | coding | downstream | 218730 | 15672260 ~ 15697397 (+) |
| G227808 | LOC106578386 | non-coding | upstream | 7018 | 15396902 ~ 15441498 (+) |
| G227800 | NA | non-coding | upstream | 55741 | 15392149 ~ 15392775 (+) |
| G227629 | NA | non-coding | upstream | 138345 | 15309221 ~ 15310171 (+) |
| G227619 | NA | non-coding | upstream | 166527 | 15281673 ~ 15281989 (+) |
| G227845 | LOC106605585 | non-coding | downstream | 1015 | 15454545 ~ 15459630 (+) |
| G227846 | LOC106577653 | non-coding | downstream | 4378 | 15457908 ~ 15462932 (+) |
| G227881 | NA | non-coding | downstream | 37835 | 15491365 ~ 15505385 (+) |
| G227911 | NA | non-coding | downstream | 86806 | 15540336 ~ 15540824 (+) |
| G227963 | NA | non-coding | downstream | 172934 | 15626464 ~ 15628330 (+) |
| G227606 | NA | other | upstream | 204234 | 15243946 ~ 15244282 (+) |
| LOC110511049 | LOC106605627 | other | upstream | 352603 | 15072005 ~ 15095913 (+) |
| G227405 | NA | other | upstream | 450441 | 14997159 ~ 14998075 (+) |
| LOC110510950 | LOC106605624 | other | upstream | 457222 | 14984771 ~ 14991394 (+) |
| LOC118944476 | LOC106605624 | other | upstream | 473539 | 14942150 ~ 14984145 (+) |
| LOC118944532 | NA | other | downstream | 1059973 | 16477925 ~ 16515897 (+) |
| LOC110503770 | LOC106605493 | other | downstream | 1189821 | 16619192 ~ 16674738 (+) |
| LOC100653482 | mrap2 | other | downstream | 1341169 | 16794699 ~ 16801793 (+) |
| G230916 | NA | other | downstream | 2841824 | 18295354 ~ 18296105 (+) |
