G227881


Basic Information

Item Value
gene id G227881
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15491365 ~ 15505385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU260677
attatcgctcgcccagtgctctttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaactacttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacagacctctgagactatcacagtgcaggtgcatttatacggagacttaattacacacaggtgcattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaggtaaaggggctgaaaaattgggcgtgcaaagttattcagcccccttaacttaatactttgtagcgccaccttttgctgcgattacagctgtaagt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260677 True 393 lncRNA 0.43 2 15491365 15505385

Neighbor

gene id symbol gene type direction distance location
ncam3 nca11 coding upstream 101281 15372460 ~ 15390084 (+)
sult2st3 LOC106577720 coding upstream 158399 15328444 ~ 15332966 (+)
LOC110519928 LOC106605633 coding upstream 167347 15320363 ~ 15324018 (+)
gapdhs LOC106577739 coding upstream 171462 15299608 ~ 15319903 (+)
LOC110519929 LOC106577750 coding upstream 193242 15282905 ~ 15298123 (+)
rbm42 LOC106578518 coding downstream 49365 15554750 ~ 15577801 (+)
arhgap33 LOC106578439 coding downstream 73027 15578412 ~ 15619099 (+)
zmp:0000000951 LOC106578502 coding downstream 127178 15632563 ~ 15636625 (+)
ppox LOC106605668 coding downstream 131351 15636736 ~ 15644078 (+)
zgc:162160 LOC106605640 coding downstream 166875 15672260 ~ 15697397 (+)
G227846 LOC106577653 non-coding upstream 28433 15457908 ~ 15462932 (+)
G227845 LOC106605585 non-coding upstream 31735 15454545 ~ 15459630 (+)
G227844 LOC106577653 non-coding upstream 37835 15448516 ~ 15453530 (+)
G227808 LOC106578386 non-coding upstream 49867 15396902 ~ 15441498 (+)
G227800 NA non-coding upstream 98590 15392149 ~ 15392775 (+)
G227911 NA non-coding downstream 34951 15540336 ~ 15540824 (+)
G227963 NA non-coding downstream 121079 15626464 ~ 15628330 (+)
G227962 NA non-coding downstream 123043 15628428 ~ 15628719 (+)
G227971 NA non-coding downstream 147213 15652598 ~ 15702948 (+)
LOC110503805 LOC106605641 non-coding downstream 206202 15711043 ~ 15788655 (+)
G227606 NA other upstream 247083 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 395452 15072005 ~ 15095913 (+)
G227405 NA other upstream 493290 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 500071 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 516388 14942150 ~ 14984145 (+)
LOC118944532 NA other downstream 1008118 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1137966 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1289314 16794699 ~ 16801793 (+)
G230916 NA other downstream 2789969 18295354 ~ 18296105 (+)

Expression


Co-expression Network