G227911


Basic Information

Item Value
gene id G227911
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15540336 ~ 15540824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU260708
AGGCAAGCCTCAAGATGAGTGACGAAAAAGCTGCGACATTGGAGTTGAAGGCAAGCTAAAAGGGACAGTCAATAAGATTTAAACCGATATAAATGCATTTAAAAagggggtgggtataatttgtggaacgttccaacaggaatccgTTCCAAAAATTTCGGAAataacaaggttgccaacaaacaacgcatacaaagtCGTATAGCGGTAGAATGAGATTCCGGATAGGGAGTGGGCTATGTAATTCAGTGTAACCACGTTTATTCCGAAAAATATCTGTCTTCATTCTGGTAGCCTCCACCATTTCTCGTTCGTTGTTTTAGTTATTTCCGGTGTGTCGGCATTCGGCGGATGAACTCTACTGCGCCTCAATTAGGCTATCGCTATGGTTAACATGTAACTTAACTAATGACTGCTAGCGCCAATATTTTACTAGTTAGGTTGTTTGAAAACAATTGTTACCgatgatactgtatatatcaGCCCACT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260708 True 489 lncRNA 0.41 1 15540336 15540824

Neighbor

gene id symbol gene type direction distance location
ncam3 nca11 coding upstream 150252 15372460 ~ 15390084 (+)
sult2st3 LOC106577720 coding upstream 207370 15328444 ~ 15332966 (+)
LOC110519928 LOC106605633 coding upstream 216318 15320363 ~ 15324018 (+)
gapdhs LOC106577739 coding upstream 220433 15299608 ~ 15319903 (+)
LOC110519929 LOC106577750 coding upstream 242213 15282905 ~ 15298123 (+)
rbm42 LOC106578518 coding downstream 13926 15554750 ~ 15577801 (+)
arhgap33 LOC106578439 coding downstream 37588 15578412 ~ 15619099 (+)
zmp:0000000951 LOC106578502 coding downstream 91739 15632563 ~ 15636625 (+)
ppox LOC106605668 coding downstream 95912 15636736 ~ 15644078 (+)
zgc:162160 LOC106605640 coding downstream 131436 15672260 ~ 15697397 (+)
G227881 NA non-coding upstream 34951 15491365 ~ 15505385 (+)
G227846 LOC106577653 non-coding upstream 77404 15457908 ~ 15462932 (+)
G227845 LOC106605585 non-coding upstream 80706 15454545 ~ 15459630 (+)
G227844 LOC106577653 non-coding upstream 86806 15448516 ~ 15453530 (+)
G227808 LOC106578386 non-coding upstream 98838 15396902 ~ 15441498 (+)
G227963 NA non-coding downstream 85640 15626464 ~ 15628330 (+)
G227962 NA non-coding downstream 87604 15628428 ~ 15628719 (+)
G227971 NA non-coding downstream 111774 15652598 ~ 15702948 (+)
LOC110503805 LOC106605641 non-coding downstream 170763 15711043 ~ 15788655 (+)
G228011 NA non-coding downstream 199396 15740220 ~ 15740681 (+)
G227606 NA other upstream 296054 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 444423 15072005 ~ 15095913 (+)
G227405 NA other upstream 542261 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 549042 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 565359 14942150 ~ 14984145 (+)
LOC118944532 NA other downstream 972679 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1102527 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1253875 16794699 ~ 16801793 (+)
G230916 NA other downstream 2754530 18295354 ~ 18296105 (+)

Expression


Co-expression Network