G228034 (LOC106578507)


Basic Information

Item Value
gene id G228034
gene name LOC106578507
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15815287 ~ 15817140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU260833
AGGAATGTTGTGCATCTAATTAGCCGCTCATAACACCACTTCAGGTTAATCATTTCCATTGACCAGCAGTAATGGGACGCCGTCACTGACCGCTAGGTAGGCTGTGTCCCTCTCGATTGCGTCTGCCAGCCGGCTCAGGAGCAGCCCGCGGTCCGACGCGTCCATGCGTCGCCATGGTGACCCAAACCGGAAGGCCTCCCTGGCAGCCTTCACAGCCTTGTCCACATCTGCCTTGTCTGCCTCAGCCACCTGACAGATGACCTCTCCTGTGGCTGGGTTGATGGTGGGGAAGGACCTCTTGCTGACGGCATCCTGCCACTCGTTATTGATGAACAGCTTGTTGTAATGGACTTCGGGCTGTGCGCTTGGTACCGGGATGGCGGCTGCAGAATACTGACAATTCGAAATGCCAGAGATTCGAGGCAAAGTTCGGGATAACACAATTCGGAGCATCGTGCTTCTTCAACACAAATGTGTGTGTCAACCAGGAGAGCGGGCTTTCACAAAGTATTGTACAGTGAAGTCGATCGTCATCTGTCACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260833 True 542 lncRNA 0.54 3 15815287 15817140

Neighbor

gene id symbol gene type direction distance location
LOC110512192 LOC106578478 coding upstream 14101 15798945 ~ 15801186 (+)
zp3d.1 LOC106605642 coding upstream 19764 15791844 ~ 15795523 (+)
LOC110503805 LOC106605641 coding upstream 26632 15711043 ~ 15788655 (+)
fbl fbrl coding upstream 105050 15706305 ~ 15710237 (+)
zgc:162160 LOC106605640 coding upstream 117890 15672260 ~ 15697397 (+)
LOC110512168 LOC106578482 coding downstream 13693 15830833 ~ 15844953 (+)
LOC110512131 LOC106605648 coding downstream 29080 15846220 ~ 15853237 (+)
LOC110512109 LOC106605649 coding downstream 44479 15861619 ~ 15864453 (+)
LOC110512078 stx12 coding downstream 50115 15867255 ~ 15878522 (+)
LOC110512064 LOC106578487 coding downstream 68885 15886025 ~ 15888715 (+)
G228032 NA non-coding upstream 13432 15801361 ~ 15801855 (+)
G228011 NA non-coding upstream 74606 15740220 ~ 15740681 (+)
G227971 NA non-coding upstream 112339 15652598 ~ 15702948 (+)
G227962 NA non-coding upstream 186568 15628428 ~ 15628719 (+)
G228223 NA non-coding downstream 8164 15825304 ~ 15825708 (+)
G228414 NA non-coding downstream 348883 16166023 ~ 16166365 (+)
G228451 NA non-coding downstream 409766 16226906 ~ 16229345 (+)
G228707 NA non-coding downstream 874404 16691544 ~ 16693504 (+)
G228711 NA non-coding downstream 885512 16702652 ~ 16702864 (+)
G227606 NA other upstream 571005 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 719374 15072005 ~ 15095913 (+)
G227405 NA other upstream 817212 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 823993 14984771 ~ 14991394 (+)
LOC118944532 NA other downstream 696363 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 826211 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 977559 16794699 ~ 16801793 (+)
G230916 NA other downstream 2478214 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 2752869 18569698 ~ 18588248 (+)

Expression


Co-expression Network