XLOC_021900


Basic Information

Item Value
gene id XLOC_021900
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37524890 ~ 37546006 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044889
CAGCAAATCGTCCTGTtcaaaaaatgtgtaaactgCAGATGCCGCATCCGTGAACACTTCCAAAAAACATAAGGATGATGTTATATTACACACAAGCAATAGAGCTGTTAAAATACGCTGCGCTTTCATTGTTAAAGCAAATCATCCAGGTTTCTTCTTGTGTTTCGTTTCTGGTAATGTGCACTCCTTTAGCAATAAGCTGACATGGCAAACTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044889 True 216 lncRNA 0.39 2 37524890 37546006

Neighbor

gene id symbol gene type direction distance location
XLOC_021899 AL954146.3 coding upstream 32039 37492735 ~ 37492851 (+)
XLOC_021898 agmat coding upstream 34641 37482727 ~ 37490249 (+)
XLOC_021897 pink1 coding upstream 44105 37466967 ~ 37480785 (+)
XLOC_021896 cdaa coding upstream 58567 37458602 ~ 37466323 (+)
XLOC_021895 AL954146.1 coding upstream 70906 37444933 ~ 37453984 (+)
XLOC_021901 plekhg5b coding downstream 33101 37579107 ~ 37720166 (+)
XLOC_021902 NA coding downstream 114672 37660678 ~ 37661442 (+)
XLOC_021903 NA coding downstream 176445 37722451 ~ 37724792 (+)
XLOC_021904 NA coding downstream 192697 37738703 ~ 37798412 (+)
XLOC_021905 irx7 coding downstream 269639 37815645 ~ 37816969 (+)
XLOC_021894 AL954146.2 non-coding upstream 85940 37438834 ~ 37438950 (+)
XLOC_021891 NA non-coding upstream 91661 37227181 ~ 37433229 (+)
XLOC_021892 NA non-coding upstream 237264 37286414 ~ 37287626 (+)
XLOC_021889 NA non-coding upstream 406776 37113287 ~ 37118114 (+)
XLOC_021906 NA non-coding downstream 296250 37842256 ~ 37926073 (+)
XLOC_021907 NA non-coding downstream 358464 37904470 ~ 37904696 (+)

Expression


Co-expression Network