G228715


Basic Information

Item Value
gene id G228715
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16707159 ~ 16734495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU261611
ctctagagcagtgatgttttggggctgttgctgggcaacacagactttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttatgaagccactccttcattgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacagtgccttgcgaaagtattcggcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU261611 True 277 lncRNA 0.49 2 16707159 16734495

Neighbor

gene id symbol gene type direction distance location
sim1a LOC106579462 coding upstream 6325 16678893 ~ 16700834 (+)
LOC110503770 LOC106605493 coding upstream 32421 16619192 ~ 16674738 (+)
LOC118936471 NA coding upstream 109157 16592154 ~ 16598002 (+)
LOC118946105 LOC106605491 coding upstream 131936 16551435 ~ 16575223 (+)
LOC118944532 NA coding upstream 191262 16477925 ~ 16515897 (+)
LOC110511998 LOC106579451 coding downstream 26006 16760501 ~ 16787229 (+)
LOC100653482 mrap2 coding downstream 60433 16794699 ~ 16801793 (+)
LOC110503758 LOC106605505 coding downstream 488087 17222582 ~ 17341150 (+)
LOC110505127 NA coding downstream 622279 17356774 ~ 17359570 (+)
LOC110511964 LOC106605506 coding downstream 728468 17462963 ~ 17476591 (+)
G228711 NA non-coding upstream 4295 16702652 ~ 16702864 (+)
G228707 NA non-coding upstream 13655 16691544 ~ 16693504 (+)
G228451 NA non-coding upstream 477814 16226906 ~ 16229345 (+)
G228414 NA non-coding upstream 540794 16166023 ~ 16166365 (+)
G228223 NA non-coding upstream 881451 15825304 ~ 15825708 (+)
G228752 NA non-coding downstream 27626 16762121 ~ 16762351 (+)
G228793 LOC106605502 non-coding downstream 115481 16849976 ~ 16850190 (+)
G229428 NA non-coding downstream 155526 16890021 ~ 16890258 (+)
G229430 NA non-coding downstream 158813 16893308 ~ 16896967 (+)
zgc:162160 LOC106605640 other upstream 1010515 15672260 ~ 15697397 (+)
G227606 NA other upstream 1462877 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 1611246 15072005 ~ 15095913 (+)
G230916 NA other downstream 1560859 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 1835514 18569698 ~ 18588248 (+)
G231438 NA other downstream 2116754 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 2491871 19226366 ~ 19234295 (+)

Expression


Co-expression Network