G228793 (LOC106605502)


Basic Information

Item Value
gene id G228793
gene name LOC106605502
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16849976 ~ 16850190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU261723
GTAGATCTTGTCGATGTGATTGTTGTTCTGGTTGTACTTCACCAACACCCTGTCCTGGTTGCTGAGGAGGTTGTCCTTGTCGTAGTACCGCCTCACTTCATAGGGCAGGTTCTCTGCACCGTGGGAATGGAGGTTACCAATGGTGTAGTAGGTGTACAGGTTCTGGTCTTTCAGTTTGGGGAGTAACAGTTTGTAGTTCTTGAACATATGGAACC

Function

NR:

description
uncharacterized protein LOC110539089

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261723 True 215 lncRNA 0.39 1 16849976 16850190

Neighbor

gene id symbol gene type direction distance location
LOC100653482 mrap2 coding upstream 48183 16794699 ~ 16801793 (+)
LOC110511998 LOC106579451 coding upstream 62749 16760501 ~ 16787229 (+)
sim1a LOC106579462 coding upstream 149142 16678893 ~ 16700834 (+)
LOC110503770 LOC106605493 coding upstream 175238 16619192 ~ 16674738 (+)
LOC118936471 NA coding upstream 251974 16592154 ~ 16598002 (+)
LOC110503758 LOC106605505 coding downstream 372392 17222582 ~ 17341150 (+)
LOC110505127 NA coding downstream 506584 17356774 ~ 17359570 (+)
LOC110511964 LOC106605506 coding downstream 612773 17462963 ~ 17476591 (+)
LOC110503753 LOC106579405 coding downstream 634018 17484208 ~ 17717455 (+)
LOC110511951 LOC106605515 coding downstream 869547 17719737 ~ 17723597 (+)
G228752 NA non-coding upstream 87625 16762121 ~ 16762351 (+)
G228715 NA non-coding upstream 115481 16707159 ~ 16734495 (+)
G228722 NA non-coding upstream 138159 16710910 ~ 16711817 (+)
G228711 NA non-coding upstream 147112 16702652 ~ 16702864 (+)
G229428 NA non-coding downstream 39831 16890021 ~ 16890258 (+)
G229430 NA non-coding downstream 43118 16893308 ~ 16896967 (+)
G229431 NA non-coding downstream 45593 16895783 ~ 16897635 (+)
G229433 NA non-coding downstream 47636 16897826 ~ 16898546 (+)
G229448 NA non-coding downstream 54399 16904589 ~ 16904979 (+)
LOC118944532 NA other upstream 334083 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 1153332 15672260 ~ 15697397 (+)
G227606 NA other upstream 1605694 15243946 ~ 15244282 (+)
G230916 NA other downstream 1445164 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 1719819 18569698 ~ 18588248 (+)
G231438 NA other downstream 2001059 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 2376176 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 2976940 19821356 ~ 19844652 (+)

Expression


Co-expression Network