G229578


Basic Information

Item Value
gene id G229578
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17063483 ~ 17063761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU262601
gattataacagaacatgatggccaagatgttcaaatgttcataaaagaccagcatggtcaaataataatgttgctctctttcactctgtctctctctctctctctctctctctctctctctgtcacactctctctctctgtctctctctctctgtcactctctctcgctctctgtcactctctctatctctctctctctctctctgtcactctctgtcactctctctctctgtctctctctctctgtttctcagcgAGTGGTAATAGTGAGTTGTAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262601 True 279 lncRNA 0.49 1 17063483 17063761

Neighbor

gene id symbol gene type direction distance location
LOC100653482 mrap2 coding upstream 261690 16794699 ~ 16801793 (+)
LOC110511998 LOC106579451 coding upstream 276256 16760501 ~ 16787229 (+)
sim1a LOC106579462 coding upstream 362649 16678893 ~ 16700834 (+)
LOC110503770 LOC106605493 coding upstream 388745 16619192 ~ 16674738 (+)
LOC118936471 NA coding upstream 465481 16592154 ~ 16598002 (+)
LOC110503758 LOC106605505 coding downstream 158821 17222582 ~ 17341150 (+)
LOC110505127 NA coding downstream 293013 17356774 ~ 17359570 (+)
LOC110511964 LOC106605506 coding downstream 399202 17462963 ~ 17476591 (+)
LOC110503753 LOC106579405 coding downstream 420447 17484208 ~ 17717455 (+)
LOC110511951 LOC106605515 coding downstream 655976 17719737 ~ 17723597 (+)
G229577 NA non-coding upstream 2055 17061224 ~ 17061428 (+)
G229572 NA non-coding upstream 6686 17056441 ~ 17056797 (+)
G229543 NA non-coding upstream 45921 17017266 ~ 17017562 (+)
G229520 NA non-coding upstream 80333 16978216 ~ 16983150 (+)
G229490 NA non-coding upstream 119726 16943512 ~ 16943757 (+)
G229581 NA non-coding downstream 9104 17072865 ~ 17073074 (+)
G229538 NA non-coding downstream 11789 17075550 ~ 17077677 (+)
G229776 NA non-coding downstream 127044 17190805 ~ 17191017 (+)
G229778 NA non-coding downstream 127938 17191699 ~ 17191909 (+)
LOC118944532 NA other upstream 547590 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 1366839 15672260 ~ 15697397 (+)
G227606 NA other upstream 1819201 15243946 ~ 15244282 (+)
G230916 NA other downstream 1231593 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 1506248 18569698 ~ 18588248 (+)
G231438 NA other downstream 1787488 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 2162605 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 2763369 19821356 ~ 19844652 (+)

Expression


Co-expression Network