G230288


Basic Information

Item Value
gene id G230288
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17782933 ~ 17785805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU263353
gtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactacacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactacacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgacttttatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactacacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactacacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgatttatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactacacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactagacatgttgttttcttttttattattattgcaGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263353 True 1428 lncRNA 0.37 2 17782933 17785805

Neighbor

gene id symbol gene type direction distance location
LOC110511951 LOC106605515 coding upstream 59336 17719737 ~ 17723597 (+)
LOC110503753 LOC106579405 coding upstream 65478 17484208 ~ 17717455 (+)
LOC110511964 LOC106605506 coding upstream 306342 17462963 ~ 17476591 (+)
LOC110505127 NA coding upstream 423363 17356774 ~ 17359570 (+)
LOC110503758 LOC106605505 coding upstream 441783 17222582 ~ 17341150 (+)
LOC110511937 LOC106579397 coding downstream 72471 17858276 ~ 17938416 (+)
LOC110511872 LOC106605517 coding downstream 200202 17986007 ~ 18011922 (+)
trnar-acg-3 NA coding downstream 263173 18048978 ~ 18049050 (+)
LOC110511835 LOC106579338 coding downstream 374848 18160653 ~ 18163990 (+)
LOC118944496 LOC106579030 coding downstream 389628 18175433 ~ 18178854 (+)
G230246 NA non-coding upstream 74037 17708218 ~ 17708896 (+)
G230138 NA non-coding upstream 264005 17518626 ~ 17518928 (+)
G230105 NA non-coding upstream 303772 17478887 ~ 17479161 (+)
G229874 NA non-coding upstream 421362 17361350 ~ 17361571 (+)
G229870 NA non-coding upstream 431559 17351161 ~ 17351374 (+)
G230378 NA non-coding downstream 128570 17914375 ~ 17915901 (+)
G230381 NA non-coding downstream 131126 17916931 ~ 17917402 (+)
G230312 NA non-coding downstream 154729 17940534 ~ 17942259 (+)
G230401 NA non-coding downstream 178167 17963972 ~ 17964378 (+)
LOC100653482 mrap2 other upstream 984001 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1135349 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1267040 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2086289 15672260 ~ 15697397 (+)
G227606 NA other upstream 2538651 15243946 ~ 15244282 (+)
G230916 NA other downstream 509549 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 784204 18569698 ~ 18588248 (+)
G231438 NA other downstream 1065444 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1440561 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 2041325 19821356 ~ 19844652 (+)

Expression


Co-expression Network