G230401


Basic Information

Item Value
gene id G230401
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17963972 ~ 17964378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU263475
GCAAAATCAAGTCTTGTCTTTATATTTTCTCATCTTAAAATCAATTAGTCCATTTTAGTTTGGGCCTAGTAAGCTATTTGTGAATAAAAGAGCATGTCTTTGTGATGGGTACTTTGTCATTTAATGTGTGTTGTCCAAATGGACATGTATCCTCTCTGAAACACTCCTATGTTAAATTACCTGTTCTGTCTTGGTGGCTGAGCGCTGGATGATTTCTGTATCCTCAAAACACAGAAAGCCACTTTGTAGGAGGTTATCCAGAATGCACTGCGTGCTCTTCACCTGGGAGACCAGTAGCTCACGGTGCAAGGTGAACAGTTGGACAGTGGACACATGGCCCATTAGTCCAGCACGGACTTCTTCGGCACTGGAGCCCATAATATTCATGCAGCTGGACTTCAGCTTTT

Function

NR:

description
nucleotide-binding oligomerization domain-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263475 True 407 lncRNA 0.49 1 17963972 17964378

Neighbor

gene id symbol gene type direction distance location
LOC110511937 LOC106579397 coding upstream 26542 17858276 ~ 17938416 (+)
LOC110511951 LOC106605515 coding upstream 240375 17719737 ~ 17723597 (+)
LOC110503753 LOC106579405 coding upstream 246517 17484208 ~ 17717455 (+)
LOC110511964 LOC106605506 coding upstream 487381 17462963 ~ 17476591 (+)
LOC110505127 NA coding upstream 604402 17356774 ~ 17359570 (+)
LOC110511872 LOC106605517 coding downstream 21629 17986007 ~ 18011922 (+)
trnar-acg-3 NA coding downstream 84600 18048978 ~ 18049050 (+)
LOC110511835 LOC106579338 coding downstream 196275 18160653 ~ 18163990 (+)
LOC118944496 LOC106579030 coding downstream 211055 18175433 ~ 18178854 (+)
LOC110511795 rwdd1 coding downstream 224235 18188613 ~ 18197679 (+)
G230312 NA non-coding upstream 21713 17940534 ~ 17942259 (+)
G230381 NA non-coding upstream 46570 17916931 ~ 17917402 (+)
G230378 NA non-coding upstream 48071 17914375 ~ 17915901 (+)
G230288 NA non-coding upstream 178167 17782933 ~ 17785805 (+)
G230402 NA non-coding downstream 228 17964606 ~ 17964850 (+)
G230421 NA non-coding downstream 26033 17990411 ~ 17990691 (+)
G230422 NA non-coding downstream 26394 17990772 ~ 17990999 (+)
G230425 NA non-coding downstream 30478 17994856 ~ 17995076 (+)
G230411 NA non-coding downstream 38304 18002682 ~ 18003074 (+)
LOC100653482 mrap2 other upstream 1165040 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1316388 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1448079 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2267328 15672260 ~ 15697397 (+)
G227606 NA other upstream 2719690 15243946 ~ 15244282 (+)
G230916 NA other downstream 330976 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 605631 18569698 ~ 18588248 (+)
G231438 NA other downstream 886871 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1261988 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1862752 19821356 ~ 19844652 (+)

Expression


Co-expression Network