G230727


Basic Information

Item Value
gene id G230727
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17999630 ~ 18000387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU263831
gggatggtgttctcagggtgatgagaggtgttgggtttgcgccagacatagcgttttccttgatggccaaaaagctacattttagtctcatctgaccagagtaccttcttccatatgttggGGGAGTCTctacatgccttttggtgaacaccaaacgtgtttacttatttttttctttaagcaatggctttttctggccactcttccgtaaagcccagctctgtggagtgtacggcttaaagtgatcctatggacagatactccaatctccgctgtggagcattgcagctccttcagggttatctttggtctcgttgttgcctctctgattaatgccctccttgcctggtccgtgtgttttggtgggcggccctctcttggcaggtttgttgtggtgccatattctttcaattttttaataatggatttaacagTGCTCTgagggatgttcaaagtttctgatatgtttgtataacccaaccctgatctgtacttctccacaactttgtccctgacctgtttggagagctccttggtcttcatggtgccgcttgcttggtggtgccccttgcttagtggtgtttcagactctggggcctttcagaacaggtgtatacatactgagatcatgtaacaaatcatgtgacacttagattgcacacaggtggactttgtttaactaattatgtgacttctgaaggtaattggttgcaccagatcttatttaggggattcatagcaaagggggtgaatacata

Function

NR:

description
putative transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263831 True 758 lncRNA 0.45 1 17999630 18000387

Neighbor

gene id symbol gene type direction distance location
LOC110505118 LOC106579600 coding downstream 21977 17975160 ~ 17985544 (-)
LOC110511884 cg024 coding downstream 29779 17968009 ~ 17969851 (-)
LOC110511898 LOC106579390 coding downstream 34752 17957248 ~ 17964878 (-)
LOC110511923 LOC106579390 coding downstream 52194 17940518 ~ 17947436 (-)
LOC118946294 NA coding downstream 894248 17102465 ~ 17105382 (-)
LOC110511860 LOC106579366 coding upstream 32956 18033343 ~ 18048841 (-)
LOC110511851 LOC106579350 coding upstream 49359 18049746 ~ 18085029 (-)
LOC110503747 lars2 coding upstream 93317 18093704 ~ 18154474 (-)
LOC110511808 LOC106579331 coding upstream 180103 18180490 ~ 18182783 (-)
LOC110511774 LOC106579313 coding upstream 199671 18200058 ~ 18207022 (-)
G230722 NA non-coding downstream 9169 17990261 ~ 17990461 (-)
G230720 NA non-coding downstream 10757 17988640 ~ 17988873 (-)
G230710 NA non-coding downstream 26400 17972855 ~ 17973230 (-)
G230707 NA non-coding downstream 28965 17970427 ~ 17970665 (-)
G230726 NA non-coding upstream 2279 18002666 ~ 18003098 (-)
G230730 LOC106605517 non-coding upstream 6680 18007067 ~ 18007309 (-)
G230731 NA non-coding upstream 8336 18008723 ~ 18009099 (-)
G230732 NA non-coding upstream 10134 18010521 ~ 18010735 (-)
G230734 NA non-coding upstream 14095 18014482 ~ 18018436 (-)
G229707 NA other downstream 951286 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 1149431 16849972 ~ 16850199 (-)
G229373 LOC100194703 other downstream 1159791 16839389 ~ 16839839 (-)
G228191 LOC106578455 other downstream 2208465 15762029 ~ 15791401 (-)
G231652 rn146 other upstream 599343 18599730 ~ 18601875 (-)
LOC110511176 LOC106579058 other upstream 1158913 19065512 ~ 19282368 (-)
rims2a LOC106579570 other upstream 1541715 19416054 ~ 19652601 (-)
G232980 NA other upstream 1647699 19648086 ~ 19648629 (-)

Expression


Co-expression Network