G230804


Basic Information

Item Value
gene id G230804
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18122929 ~ 18123734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU263933
GTGTCTAGATGACCGTCAAACTCCTGCTTGCTGGAGATCACCAGGGGAAGTTCCTGACTGGTAAATAGGTTGTGAGCTGTGACCTCTGTCAGGCAGTCTGGGGGTCAAAGGTCAGGAGTCAGCACTTCTCCCCTGGTGCCTctctgcctgtctgcaggactCTCTCCAGAGCTGAGCGGACTGGGCTGGTACCATGCAGCAGTCTGTGGGAGGGGACAATGGACAGGTAGGCAGCCCCAAACACTGCCTCTGGGCTGGAGGTGTAGCCTGCAAGAGTCTCCCCCGTCTCCTCCCCATTCACCGTCatggagggaagg

Function

NR:

description
probable leucine--tRNA ligase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263933 True 317 lncRNA 0.59 2 18122929 18123734

Neighbor

gene id symbol gene type direction distance location
trnar-acg-3 NA coding upstream 73879 18048978 ~ 18049050 (+)
LOC110511872 LOC106605517 coding upstream 111007 17986007 ~ 18011922 (+)
LOC110511937 LOC106579397 coding upstream 185499 17858276 ~ 17938416 (+)
LOC110511951 LOC106605515 coding upstream 399332 17719737 ~ 17723597 (+)
LOC110503753 LOC106579405 coding upstream 405474 17484208 ~ 17717455 (+)
LOC110511835 LOC106579338 coding downstream 36919 18160653 ~ 18163990 (+)
LOC118944496 LOC106579030 coding downstream 51699 18175433 ~ 18178854 (+)
LOC110511795 rwdd1 coding downstream 64879 18188613 ~ 18197679 (+)
LOC110511763 LOC106605526 coding downstream 95865 18219599 ~ 18230637 (+)
LOC110511665 LOC106579269 coding downstream 219593 18343327 ~ 18348845 (+)
G230414 NA non-coding upstream 107671 18014510 ~ 18015258 (+)
G230413 NA non-coding upstream 110520 18012117 ~ 18012409 (+)
G230411 NA non-coding upstream 119855 18002682 ~ 18003074 (+)
G230425 NA non-coding upstream 127853 17994856 ~ 17995076 (+)
G230422 NA non-coding upstream 131930 17990772 ~ 17990999 (+)
G230820 lars2 non-coding downstream 21887 18145621 ~ 18148461 (+)
G230929 NA non-coding downstream 36512 18160246 ~ 18160484 (+)
G230936 LOC106579331 non-coding downstream 56824 18180558 ~ 18181570 (+)
G230938 NA non-coding downstream 59968 18183702 ~ 18183937 (+)
LOC100653482 mrap2 other upstream 1323997 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1475345 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1607036 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2426285 15672260 ~ 15697397 (+)
G227606 NA other upstream 2878647 15243946 ~ 15244282 (+)
G230916 NA other downstream 171620 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 446275 18569698 ~ 18588248 (+)
G231438 NA other downstream 727515 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1102632 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1703396 19821356 ~ 19844652 (+)

Expression


Co-expression Network