G230936 (LOC106579331)


Basic Information

Item Value
gene id G230936
gene name LOC106579331
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18180558 ~ 18181570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU264084
GCCTCACTCAGGCTTCCTTTACTAGGATATGGAACTGTAACATTTTACCAGAGTAATTTCTTCAGCAAAAACTGCTGTAGTGTTTTAATCAAGTTTGATCACGAAAATATAGGCTACTCCTCCCTCACATTCACATTGTTTTTACaatttcaaaataaaaaatgactGCTTGTAAAGGCTCAGGCTGCAGGTCATAGGCCCAGGTCGGGGCGGTCTTCAATTTTCAATCCTGATCAAGAGTCCTGGTGTGTCTTCTTATGCAATGTCAGACCCTGGCGAGTATCGAAAACGTTCTTTACACCCAAGACAGCGATACAGTTTGTGATTGCTCATATGCTCTTCCAGCAAAACCTCCTCATCCTCTGTGAAGCATATACCACAGATGTAACAAGAAAGTGATCCTGTACTTGCAACATGAAAATGTAGATGTTCTTTCAAACTTTCTACAGACTCAATTACGCATTACTGGGGATAGGGGATTTCAAATGGGACAACACTGTGGATTCTCTGACTTTAGTACAGACTCTTGGTCCAACTTCTGTCTGTGTTCTCTTTGACTTGGGTGGAGGTCCTTCACTCTCAATCTGAGTTTCAGACCAGTCTGAATTGACTGCAGATGGGGGCTGAGAGTCACTGTCACTGACATTTTCTGTTTTAATCTGTTCAATTTGCATTGTGGTGCTGGGTAGCTCATCCCTGTCTGTGTTTTCTTCACGTTGGGTTAAAACTTGGTAAAGATGTGAGGACTGACTTGGGTTCTGATTACAGTCACCTTTTACTCTGGCAGTAGATATGAAGGCTTCTGTATCAGCAGAATCATCAGTATCATCAGTATCATAATCCATCGCTTGAAGCTGCTCTTGTCCCTGACTGATGACCCATAGCTCCTCCTGTTCCACTTTAATCTGAGAAGGTTCCTCCTGCCCCAGACCAGGACTACAATCCTGCTGCTCAGGGGAAACTTtttcagagatggagagagtgag

Function

NR:

description
zinc finger and BTB domain-containing protein 41-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264084 True 986 lncRNA 0.43 2 18180558 18181570

Neighbor

gene id symbol gene type direction distance location
LOC118944496 LOC106579030 coding upstream 1704 18175433 ~ 18178854 (+)
LOC110511835 LOC106579338 coding upstream 16568 18160653 ~ 18163990 (+)
trnar-acg-3 NA coding upstream 131508 18048978 ~ 18049050 (+)
LOC110511872 LOC106605517 coding upstream 168636 17986007 ~ 18011922 (+)
LOC110511937 LOC106579397 coding upstream 243128 17858276 ~ 17938416 (+)
LOC110511795 rwdd1 coding downstream 7043 18188613 ~ 18197679 (+)
LOC110511763 LOC106605526 coding downstream 38029 18219599 ~ 18230637 (+)
LOC110511665 LOC106579269 coding downstream 161757 18343327 ~ 18348845 (+)
LOC110511644 hint3 coding downstream 168055 18349625 ~ 18353319 (+)
LOC110511603 LOC106579246 coding downstream 177508 18359078 ~ 18386819 (+)
G230929 NA non-coding upstream 20074 18160246 ~ 18160484 (+)
G230820 lars2 non-coding upstream 32097 18145621 ~ 18148461 (+)
G230804 NA non-coding upstream 56824 18122929 ~ 18123734 (+)
G230414 NA non-coding upstream 165300 18014510 ~ 18015258 (+)
G230938 NA non-coding downstream 2132 18183702 ~ 18183937 (+)
G230939 NA non-coding downstream 2371 18183941 ~ 18184149 (+)
G230940 NA non-coding downstream 2587 18184157 ~ 18184391 (+)
G230946 NA non-coding downstream 13856 18195426 ~ 18195779 (+)
G230952 NA non-coding downstream 26753 18208323 ~ 18208550 (+)
LOC100653482 mrap2 other upstream 1381626 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1532974 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1664665 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2483914 15672260 ~ 15697397 (+)
G227606 NA other upstream 2936276 15243946 ~ 15244282 (+)
G230916 NA other downstream 113784 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 388439 18569698 ~ 18588248 (+)
G231438 NA other downstream 669679 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1044796 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1645560 19821356 ~ 19844652 (+)

Expression


Co-expression Network