G230954 (cf113)


Basic Information

Item Value
gene id G230954
gene name cf113
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18218023 ~ 18219107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU264104
GCATTGACAGTTCATCAATAGGCAATCAATCCAACTATTAGTCCGTATGATAAACCAAATCATATCAgtcaaaatacaaaaaaacaagtAATATCACACAGTACGACAAACTAACTAATTAGTCAGTATGACAAATTATATCAGTCCGTACAAACAACCAGCTAACAACAGTCCGTACGACAAACCCAACTAACGTCAGTCAGTGCGACAAACCCAACTAACGTCAGTCAGTGGGACCAAACCAACTAACGCCAGTCAGTGGGACAAAACCAACTAACGCCAGTCAGTGGGACAAAACCAACTAACGCCAGTCAGTGGGACAAAACCAACTAACGTCAGTCAGTACAAAAAAACAGTAAAGATGTAACAACAGGTTgaataaacaaacacatttcAGACACACTAAAATAAACCTTTAAGTGGGGAGGAGAAACGCTTCTGTTTGACTTTGGTGTGCTCTGCGGATCCCACTCCCACAGACTCCTCAGCATTACAGTGTCTGCTAGTAGGCCTACTGGAGTCCTGAGCTGATCTCAGAAAGCCTGTAGACACTGAAGAGGTGGATACAACAATGGCCACTGCTCGCCCTCCACCGAACTCCCCCCCAGCTTCAGTAATTTGCTCCTTAGACTCCAGTGTGCTATTGGATGTCCTGGGTGAGACCCCTCCTCCAATGGTGTCAAACCTATTCCCATTGTCTACTCCTCCTTCAGAACCCTCAGACCTAGACAAACCAATGTCTTGTTTGCAGTGATTGTCCACTATGGTGGTAGTGGGAGTAGGACTTGAGCTGGGCCTGACAAGACTGTGACCACCTCTACCCTCTGCTCCTCTTCCGTCATGGTCCTGTTTCTCTTTGTGTGTGGTATTGATGTGGAAGCTGAGTTCGTCGTAGGTGACTCCGGACCAGGAACAGAGGGTGCAGCCCATGTCATTCTCCAGGTGGCTCAGGAGGAGATGGGTCTTCATGTCCTCCTCCAACATCAATTCCTCGCCACAGAACTCACACGTCAGCATGGCCAATTGTTT

Function

NR:

description
zinc finger with UFM1-specific peptidase domain protein-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264104 True 1029 lncRNA 0.47 2 18218023 18219107

Neighbor

gene id symbol gene type direction distance location
LOC110511795 rwdd1 coding upstream 20344 18188613 ~ 18197679 (+)
LOC118944496 LOC106579030 coding upstream 39169 18175433 ~ 18178854 (+)
LOC110511835 LOC106579338 coding upstream 54033 18160653 ~ 18163990 (+)
trnar-acg-3 NA coding upstream 168973 18048978 ~ 18049050 (+)
LOC110511872 LOC106605517 coding upstream 206101 17986007 ~ 18011922 (+)
LOC110511763 LOC106605526 coding downstream 492 18219599 ~ 18230637 (+)
LOC110511665 LOC106579269 coding downstream 124220 18343327 ~ 18348845 (+)
LOC110511644 hint3 coding downstream 130518 18349625 ~ 18353319 (+)
LOC110511603 LOC106579246 coding downstream 139971 18359078 ~ 18386819 (+)
LOC110511593 LOC106579240 coding downstream 350591 18569698 ~ 18588248 (+)
G230952 NA non-coding upstream 9473 18208323 ~ 18208550 (+)
G230946 NA non-coding upstream 22244 18195426 ~ 18195779 (+)
G230940 NA non-coding upstream 33632 18184157 ~ 18184391 (+)
G230939 NA non-coding upstream 33874 18183941 ~ 18184149 (+)
G230938 NA non-coding upstream 34086 18183702 ~ 18183937 (+)
G230984 NA non-coding downstream 56380 18275487 ~ 18275884 (+)
G230926 NA non-coding downstream 73138 18292245 ~ 18292476 (+)
G230994 NA non-coding downstream 77868 18296975 ~ 18297278 (+)
G230995 NA non-coding downstream 78215 18297322 ~ 18298246 (+)
G230912 NA non-coding downstream 79211 18298318 ~ 18305060 (+)
LOC100653482 mrap2 other upstream 1419091 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1570439 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1702130 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2521379 15672260 ~ 15697397 (+)
G227606 NA other upstream 2973741 15243946 ~ 15244282 (+)
G230916 NA other downstream 76247 18295354 ~ 18296105 (+)
G231438 NA other downstream 632142 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1007259 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1608023 19821356 ~ 19844652 (+)

Expression


Co-expression Network