G231279


Basic Information

Item Value
gene id G231279
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18537630 ~ 18537829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU264460
AGGCAGCCTGGTGtatggggctgccacagggcttaccaggctggggagacatacaggaggcctggttctgggagcaggcacaggatgaactgagctgtgggggagcactggagatctggtgcttatCCCTGGCACCTCTCttccaggctgaatgcccactttagcccggcacgggcggagcgcaggcataggacgcACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264460 True 200 lncRNA 0.53 1 18537630 18537829

Neighbor

gene id symbol gene type direction distance location
LOC110511603 LOC106579246 coding upstream 150811 18359078 ~ 18386819 (+)
LOC110511644 hint3 coding upstream 184311 18349625 ~ 18353319 (+)
LOC110511665 LOC106579269 coding upstream 188785 18343327 ~ 18348845 (+)
LOC110511763 LOC106605526 coding upstream 306993 18219599 ~ 18230637 (+)
LOC110511795 rwdd1 coding upstream 339951 18188613 ~ 18197679 (+)
LOC110511593 LOC106579240 coding downstream 31869 18569698 ~ 18588248 (+)
LOC110511568 rn146 coding downstream 50870 18588699 ~ 18601905 (+)
LOC110511366 LOC106605529 coding downstream 149936 18687765 ~ 18692685 (+)
LOC110511341 LOC106579140 coding downstream 173807 18711636 ~ 18720405 (+)
LOC110511301 LOC106579115 coding downstream 183082 18720911 ~ 18793719 (+)
G231277 NA non-coding upstream 8265 18529063 ~ 18529365 (+)
G230997 NA non-coding upstream 231916 18305474 ~ 18305714 (+)
G230912 NA non-coding upstream 232570 18298318 ~ 18305060 (+)
G230995 NA non-coding upstream 239384 18297322 ~ 18298246 (+)
G230994 NA non-coding upstream 240352 18296975 ~ 18297278 (+)
G231288 NA non-coding downstream 10699 18548528 ~ 18548758 (+)
G231363 NA non-coding downstream 143877 18681706 ~ 18682023 (+)
G231366 NA non-coding downstream 158074 18695903 ~ 18696158 (+)
G231367 NA non-coding downstream 159509 18697338 ~ 18698907 (+)
G230916 NA other upstream 241525 18295354 ~ 18296105 (+)
LOC100653482 mrap2 other upstream 1738698 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1890046 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 2021737 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2840986 15672260 ~ 15697397 (+)
G231438 NA other downstream 313420 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 688537 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1289301 19821356 ~ 19844652 (+)
G233521 LOC106579937 other downstream 2020947 20558776 ~ 20565712 (+)

Expression


Co-expression Network