G231652 (rn146)


Basic Information

Item Value
gene id G231652
gene name rn146
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18599730 ~ 18601875 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU264859
TACACACATTTTATTTAAAATTACAAACCATGTAACAAAAGattacaaagcaaaaatagttacATAAAGGTTCTTAATGACAGTAAAATTGAGCTGACCAGATGACAATTGACAGTAAGCTGGTAAGaaataaacacatttaaaactTCAAATGGTTTTGCTGGAGACAGCCAGCAAACCACTTAGCAACCGTTGCTCTTTTCTTACCATCATAGTAATCACACAATAGAATttacaaccagagggaaaaacagTTAATCAAACTAAAATCTAAAACACcagtcctcctcctcaccagtagTGTTTAAGAAACCAACCCCTCTCTtaaaacacatgcacacattaTGAAACAGACTAGCATTTCAGATGAATAATCAGCAACTTAAATTAAAATGTTGTCTGACTTTGATCAGAGAGGTCATGGAGCATGGTGTTAATCATTTTGGAGCAGCCTAGAGCGCAACACACCAAGCTGCCGCAGAGAGAAAAACAACCACTGATCCGATCAAAACAACTGTTGACTAGCTGGTAAATTCAGCTAAATgcatttttaatttaacctttatttaactaggcaagtcagttaagaatttgttcttattgtcaatgactgcccaggaacagtgggcagtgaacctgccttgttcaggggcagaacgacagatttgtaccttggcagctctgggattcgatcttgcaaccttccggttactgttccaatgctctaaccactaggctacctgccaccccatgtcTCTTAAAATAAGAAGTCTCCTACTTTCAACACGGCTGCATCACAAACATACTGTCTGGAGACAAGGGACCGTTCAAACAACTTACATGAAACAACTCAACGCTCAATTAACAAGTTGTATGGGGAAAGACTTTGCTCCCAAGGCCCACCAGTAAATGTAGATTATCACTAATTTTCAGGGGGGTAATTTTCATCTTTAAAGTCTAATATAATGAGCATCTCCTTGCCTTGAGACAGTTATATGCAGGGTTGGTTTGAGTCGGTTTCAGAGTCCTATATTAACTGAGAATGTTAGCTACAGTGCAGAGGTTCAAGATGAGTTGAGCTCACACTTCAGTACACTGGCCGTCAGGCCTTCGCGACCTCACACTACTGCTGCTGGAGGCCTCAGCCCCAGGGGGGGACCTGTCCTCTGGGCTCTCCCCCAAACGCAGTCTCTGCTCCCGGGGATCCACTGCCTCCCCATCCCCCTCGTCGTCGCTCCAGTCCCCAGAACCATCCACAGAGGTGTTAGGACCAGATGACATGGAGGGTGTAGCAGTGGcctcttcttccccctcctctccctccccaacCTCAGCCCTCTCCGGCGCATCTGTGGGACTGATGTGGAGCAGGGCCAGGGTGTCCTCCAGGGAGGGGCTGGCCTGGCAGGAGCAGACAGGACTGTGGAGGTAGCTGGAGATGCTGCAGCCTGCTGCACTGCGGCTGCTGAAGTATCAGCCCCGTCTGCAGAGTTCCCTCTCCCTGGCGCAGCGGAACCCTGCGCACCAACCTCGGTGTCCAGACGGAGGCCCGCCACCCCTTTCTTGGGGATGTCCACAACGTCCCGTTTTATCTTGCGGCGGCGGCCGTGCTCATTGCGCCGGTACTGCACCATGTTCTCCAGGTCGGCCACGTACAGGAACCCGGCTATCAGCATCTCAGCCGTCTTCTTGCCCTTGGAGAAAGCGTCCTCCAGCTCACGACTGGTCCTTTCGTCATACTGCCACCAGCCATTCCTCCCCTCATAGTACCAGGCATTGTCCCCTGTGGCACCCCACCCTCCGGTCTTAAGCTCTTCGGGGGACAGCAGAGTGGGGTGCTCTAGGAAGTCCTCGGGAACCTCCTGTCTACAGAGAGCACAGCGCTTGCTCTGCCAGGACGCCCCTTTCACACACAGGAAGCAGAAGACATGGCGGCAGGGTAGCTGGACAGGGTGAACACAGCTCTGCAGGCAAATGGCACATTCTGGGACAGGCAGGGCAGGTGATGAGCCACTGGAAACAGAGCAGGCAGAGTCACCACTCCCCTTCTTACTGGATGGGAGCGAGCTCAAAGTGTGGTCAACCTCACCACAGCTAGCCATCCTTAGG

Function

NR:

description
E3 ubiquitin-protein ligase rnf146-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264859 True 2109 TUCP 0.50 2 18599730 18601875

Neighbor

gene id symbol gene type direction distance location
LOC110511626 LOC106579251 coding downstream 240716 18353521 ~ 18359014 (-)
LOC110511684 LOC106605538 coding downstream 288230 18298739 ~ 18311500 (-)
LOC110503742 cndp1 coding downstream 307254 18290649 ~ 18292476 (-)
LOC110511708 LOC106579301 coding downstream 314533 18278958 ~ 18285197 (-)
LOC110511716 LOC106579594 coding downstream 351596 18237744 ~ 18248134 (-)
LOC110503735 LOC106605534 coding upstream 2884 18604759 ~ 18623150 (-)
laptm4b LOC106605533 coding upstream 10217 18612092 ~ 18624427 (-)
LOC110511506 lyric coding upstream 22706 18624581 ~ 18633247 (-)
LOC110511375 NA coding upstream 31524 18633399 ~ 18676640 (-)
LOC110511352 LOC106605528 coding upstream 95462 18697337 ~ 18706474 (-)
G231649 NA non-coding downstream 4234 18594986 ~ 18595496 (-)
G231648 NA non-coding downstream 6448 18593036 ~ 18593282 (-)
G231646 NA non-coding downstream 8051 18591471 ~ 18591679 (-)
G231621 NA non-coding downstream 57359 18542022 ~ 18542371 (-)
G231617 NA non-coding downstream 64232 18535270 ~ 18535498 (-)
G231677 NA non-coding upstream 79162 18681037 ~ 18681288 (-)
G231679 NA non-coding upstream 82237 18684112 ~ 18684718 (-)
G231686 NA non-coding upstream 108217 18710092 ~ 18710295 (-)
G231753 NA non-coding upstream 212936 18814811 ~ 18815043 (-)
LOC110503747 lars2 other downstream 468676 18093704 ~ 18154474 (-)
LOC110505118 LOC106579600 other downstream 621821 17975160 ~ 17985544 (-)
G229707 NA other downstream 1551386 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 1749531 16849972 ~ 16850199 (-)
G229373 LOC100194703 other downstream 1759891 16839389 ~ 16839839 (-)
LOC110511176 LOC106579058 other upstream 557425 19065512 ~ 19282368 (-)
rims2a LOC106579570 other upstream 940227 19416054 ~ 19652601 (-)
G232980 NA other upstream 1046211 19648086 ~ 19648629 (-)
G233052 LOC106605397 other upstream 1154329 19756204 ~ 19757908 (-)
G233513 LOC106561082 other upstream 1949908 20551783 ~ 20551997 (-)

Expression


Co-expression Network