G231979


Basic Information

Item Value
gene id G231979
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19215419 ~ 19220631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU265237
agaaggagagagacagagacagagatacatagagggagagagacagagacagatatacatagagggagagagacagagacagatatacatagagggatagagacagagacagatatacatagagggagagacagagacagagatacatagagggtgagagacagagacagatatacatagagggagagagacagagacagatatacatagagggagagagacagagacagagacagatatacatagagggagagagacagagacagatatacatagagggagagagacagagacagatatacag
>TU265241
gatatacatagagggagagagacagagacagatatacatagagggagagagacagagacagatatacagagggagagacacagacagagatacatagagtgagagagacagagacagaaatacatagagggagagagacagagacagatatacatagagggagagagacagagacagatatacatagagggagagacagggacagatatacatagagggagagacagggacagatatacatagagggagagagacagagacagatatacatagagataCAGATAAGCATAGAGGGACAGATATACatagtgggagagacagagacagatatacatagagagacagataagcatagagggagagagacagagacagagatacatagagggacagggacagagacagatatacatagagggacagggacagagacagagacagagatacatagagggagagagacagagacagataaacatagagggagagagacagagacagagacagatatacatagagggaaagacagagacagagacagatatacatagagggagagagacagagacagatatacatagagggagagagacagagacagatatacag
>TU265238
catagagggagagagacagagacagagacagatatacatagagggaaagacagagacagatatacatagagggatagagacagagacagatatacatagagggatagagacagagacagatatacatagagggatagagacagagacagatatacatagagggatagagacagagacagatatacatagagggagagagacagagacagagacagatatacatagagggaaagacagagacagatatacatagagggatagagacagagacagatatacatagagggatagagacagagacagatatacatagagggatagagacagagacagatatacatagagggatagagacagagacagatatacatagagggagagacagagagagacagagacagatatacatagagggagagagacagagacagatatacatagagggatagagacagagacagatatacatagagggagagacagagacagagatacatagagggtgagagacagagacagatatacatagagggagagagacagagacagatatacatagagggagagagacagagacagagacagatatacatagagggagagagacagagacagatatacatagagggagagagacagagacagatatacag

Function

NR:

description
repetitive proline-rich cell wall protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265237 False 304 lncRNA 0.40 2 19215419 19220631
TU265241 False 609 lncRNA 0.44 4 19217821 19220631
TU265238 True 653 lncRNA 0.42 2 19218887 19220631

Neighbor

gene id symbol gene type direction distance location
LOC110511188 LOC106605483 coding upstream 149216 19044307 ~ 19066203 (+)
LOC110511248 LOC106579093 coding upstream 388697 18819001 ~ 18826722 (+)
LOC110511268 LOC106605544 coding upstream 402373 18801968 ~ 18813046 (+)
LOC110511301 LOC106579115 coding upstream 421700 18720911 ~ 18793719 (+)
LOC110511341 LOC106579140 coding upstream 495014 18711636 ~ 18720405 (+)
LOC110512399 dpys coding downstream 136141 19356772 ~ 19408498 (+)
LOC110512421 LOC106579530 coding downstream 446967 19667598 ~ 19674027 (+)
LOC110512436 LOC106579516 coding downstream 453533 19674164 ~ 19682731 (+)
LOC110503829 LOC106605397 coding downstream 474492 19695123 ~ 19762329 (+)
LOC110503837 LOC106605407 coding downstream 580608 19801239 ~ 19801909 (+)
G231978 NA non-coding upstream 721 19208446 ~ 19214698 (+)
G231949 NA non-coding upstream 80614 19134163 ~ 19134805 (+)
G231947 NA non-coding upstream 85368 19129706 ~ 19130051 (+)
G231946 NA non-coding upstream 88339 19126744 ~ 19127080 (+)
G231944 NA non-coding upstream 92995 19122211 ~ 19122424 (+)
G231987 NA non-coding downstream 15262 19235893 ~ 19243850 (+)
G231996 NA non-coding downstream 29962 19250593 ~ 19251036 (+)
G232148 NA non-coding downstream 70969 19291600 ~ 19294496 (+)
G232205 NA non-coding downstream 171171 19391802 ~ 19395926 (+)
G232215 NA non-coding downstream 193346 19413977 ~ 19418583 (+)
G231438 NA other upstream 363437 18851249 ~ 18851982 (+)
LOC110511593 LOC106579240 other upstream 628578 18569698 ~ 18588248 (+)
G230916 NA other upstream 919314 18295354 ~ 18296105 (+)
LOC100653482 mrap2 other upstream 2416487 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 2567835 16619192 ~ 16674738 (+)
G231983 LOC106597055 other downstream 5735 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 606499 19821356 ~ 19844652 (+)
G233521 LOC106579937 other downstream 1338145 20558776 ~ 20565712 (+)
G233545 NA other downstream 1387662 20608293 ~ 20608725 (+)
G234322 dcst2 other downstream 2043444 21264075 ~ 21264506 (+)

Expression


Co-expression Network