G232215


Basic Information

Item Value
gene id G232215
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19413977 ~ 19418583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU265506
ttattatttttttttttaaatcttcatTTAAATGTCATACAATATATCAACAGAGAAATAATAATGTTAGGTCATAAAAGTTAGTCTTGTTGTGGGTTCTGATCAATAGATTCTGGAGTGTCGATAGTACAGTAGCCACTTCTGTATTGCCTTTAGTAACTTTAGTATTGTCTCTCTGGTGTGATCTACTACTATTTTGACTAGGGCCTCATATTCGAAGTTTGAGCTTTAGTTGGGACACCCCACCTCTCCAATTGCAATGAACCTCATAGTTCCATTTACACATCTAGCTAGGTCTGTTGGCTTGGCGTGACCAAGCTTCTGGACAGGACAACACTGTCAGTCACCCCTTCAGGTATACAAGTACATCgacaataaaacaaacaaaaaacaaaaaaaaatcattataaacaaaaacatgtatttttcattCGAAAAGGGCTTCTGTAGAACTCATCGAGCGGGTTCCCAGTTCTGACCCCCATGGCTTAGATTGGATGAAAACCTGGAATCGCTCGATTTAGAGACAATTCCTGGTGCTAAGGAGTCCGTTACGGCCTTCTAATCCGAGCTGGTGCTCAGACCCGGCCGAGGGAGCGACGCTCGCTACGCACAATGTGTGCGACATTTTTCTCAAAACACAGGATCACATTTGCACCCCTAGAAACAGGCTCAGAAGACACAACATCAAGCATGCAGTGTAACCGGGGGGCGTGACCTGTCTGTCGCAGCATGTTTAACCTCAACACTGGGTGCTGCTGCTACAACAATGCTATCAGTCCACACACTGCTATGACCGGCTATCCAATGACGTTTGGGAAGCTTTTCTTGTCAAGGGGGCCAGGGTAGGGTCCACCAATGAGGAAGGAGGAAAGAGCTTGAACCAGCCAATCACCATGTTAGACAGGTCCAGCTCATCTAAAAGTATCTGAACTGCTCCCATAAAGGATTTATGGTCCATGCGTCCGTAGTCTCCCCATACGATG

Function

NR:

description
PREDICTED: regulating synaptic membrane exocytosis protein 4-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265506 True 986 lncRNA 0.44 2 19413977 19418583

Neighbor

gene id symbol gene type direction distance location
LOC110512399 dpys coding upstream 5479 19356772 ~ 19408498 (+)
LOC110511188 LOC106605483 coding upstream 347774 19044307 ~ 19066203 (+)
LOC110511248 LOC106579093 coding upstream 587255 18819001 ~ 18826722 (+)
LOC110511268 LOC106605544 coding upstream 600931 18801968 ~ 18813046 (+)
LOC110511301 LOC106579115 coding upstream 620258 18720911 ~ 18793719 (+)
LOC110512421 LOC106579530 coding downstream 249015 19667598 ~ 19674027 (+)
LOC110512436 LOC106579516 coding downstream 255581 19674164 ~ 19682731 (+)
LOC110503829 LOC106605397 coding downstream 276540 19695123 ~ 19762329 (+)
LOC110503837 LOC106605407 coding downstream 382656 19801239 ~ 19801909 (+)
LOC110512494 LOC106579625 coding downstream 384403 19802986 ~ 19819461 (+)
G232205 NA non-coding upstream 18051 19391802 ~ 19395926 (+)
G232148 NA non-coding upstream 119481 19291600 ~ 19294496 (+)
G231996 NA non-coding upstream 162941 19250593 ~ 19251036 (+)
G231987 NA non-coding upstream 170127 19235893 ~ 19243850 (+)
G231979 NA non-coding upstream 193346 19215419 ~ 19220631 (+)
G232297 NA non-coding downstream 142626 19561209 ~ 19561545 (+)
G232317 NA non-coding downstream 181044 19599627 ~ 19599873 (+)
G232318 NA non-coding downstream 181590 19600173 ~ 19600379 (+)
G232321 LOC106579570 non-coding downstream 185680 19604263 ~ 19604688 (+)
G232322 NA non-coding downstream 187125 19605708 ~ 19606009 (+)
G231983 LOC106597055 other upstream 179682 19226366 ~ 19234295 (+)
G231438 NA other upstream 561995 18851249 ~ 18851982 (+)
LOC110511593 LOC106579240 other upstream 827136 18569698 ~ 18588248 (+)
G230916 NA other upstream 1117872 18295354 ~ 18296105 (+)
LOC100653482 mrap2 other upstream 2615045 16794699 ~ 16801793 (+)
LOC110512505 LOC106579702 other downstream 408547 19821356 ~ 19844652 (+)
G233521 LOC106579937 other downstream 1140193 20558776 ~ 20565712 (+)
G233545 NA other downstream 1189710 20608293 ~ 20608725 (+)
G234322 dcst2 other downstream 1845492 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 1868143 21286726 ~ 21287002 (+)

Expression


Co-expression Network