G233052 (LOC106605397)


Basic Information

Item Value
gene id G233052
gene name LOC106605397
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19756204 ~ 19757908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU266427
ctctCACCATCAGTATACACTCCCAGGCCATCCATCGTATAGGCAGCACGGCTCGCCCCTGGATGCGGTAGTAGTCTCCAGCGTACAGGTTTCTGCTCATCCCAAAGTCGGCGATCTTGATGGGTCTCTCCCCGCCCCGGTCGCCCCCGCTCTCGCCCTTCTCACCCCCCACCAGGCAGTTTCTTGTGGCCAGGTCACGGTGCACGAAGTTCAGAGACGACAGAAACTTCATCCCTGAAGCTATCTGACTGGCCATGGCGATCAGAGCAGGGTAACTGAGagggagggatgtgtggtggaaGAAGAGAAGAGATAAGAGGCAGAAATACAATATTTCAGATGCAGGTGTGTATGTATATGCATCTGTCTTCATGAAAACGTGTCACtgagtgtgtgtactctgtgtgtgtgtgtgtgttacggccCGGAATTGttctgaaccgtctcagtgcttctccttccaatagggcgcttcccctttaattcccaattaaatagccagcatcagctgcgcaaaagtggggttgtgatggagacgtgaatgaggatgtgttcaacccTCAGTTCCCAAGCTGCTctattctgtttgttttgttgccTTTAAAAGTGTTTTGTAGCCTAATAGCTAGTTTACCCAGGATTGGATGcactctttgcgtccgtggactacacctctctgttgttcttcgtggcctttctcaGACAgagatctgttggcggattggattgtctgactgactacaacctttttgtatacggtatttcatttgttttggggTGATGTATACCGTGATGATTTGTAGTTAGTTGTAAGTGAGGACGTATTAGTATTTGATACGCTTTATAGTTGTGTGGTAAAATAATTGTTgttttgattgtatgatttgatACTGGGTGTACGCTACACTtgaatgaacggacaaacattgcgtgactaaggtcacttgagttccctgaactcctttaccgggctggactcttttaGGCCcaaggtacaggacatttctggaggagcCAGAGCTCATTATTTATTATattgttatgtgtgtgtgatcATTTATGTTggtaatacaacccacgcaaaagaatacagttgtttttgaagttattttcaatgttttaagggtttatgaaaggTGTATTGacttttacataagtcctttgtattggtgtagacttgacggaccagatgggactcattccctcacaaaccaaaaggagaaaccaatgttaggcacaacctacctggcacccctattaataataacctcaagtcaaaaccattagtgtgtgtgtgtactatgtgtGCGTATTACctgatggtgggggtgttgtgtGTGGGTCCAGTCTTGTCCAGCAGGACTCTGTGTGAGagGTACTGGTTGAGGTCGCCACTCTCCATGTACTCTGTGACCATACAGAGAGGGTCGCtgctcacacacactcccaacaGACTGATGATGTTGGGGTCCTTCAAACGAGACAGAATCTTCCCCTCCTTTAGGAAGTCATT
>TU266428
gtgtgtgtactatgtgtGCGTATTACctgatggtgggggtgttgtgtGTGGGTCCAGTCTTGTCCAGCAGGACTCTGTGTGAGaggtactggttgtgtgtgtgtactatgtgtGCGTATTACctgatggtgggggtgttgtgtGTGGGTCCAGTCTTGTCCAGCAGGACTCTGTGTGAGagGTACTGGTTGAGGTCGCCACTCTCCATGTACTCTGTGACCATACAGAGAGGGTCGCtgctcacacacactcccaacaGACTGATGATGTTGGGGTCCTTCAAACGAGACAGAATCTTCCCCTCCTTTAGGAAGTCATT

Function

NR:

description
PREDICTED: epithelial discoidin domain-containing receptor 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266427 False 1513 lncRNA 0.56 2 19756204 19757908
TU266428 True 319 TUCP 0.52 2 19756204 19756618

Neighbor

gene id symbol gene type direction distance location
LOC110512409 LOC106605396 coding downstream 88739 19655283 ~ 19667465 (-)
rims2a LOC106579570 coding downstream 103638 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 coding downstream 473836 19065512 ~ 19282368 (-)
LOC110511207 oxr1 coding downstream 732052 18826879 ~ 19024152 (-)
LOC110511312 LOC106605543 coding downstream 958835 18793985 ~ 18797369 (-)
LOC110512480 flot1 coding upstream 4468 19762376 ~ 19785561 (-)
LOC110512516 LOC106579712 coding upstream 84802 19827342 ~ 19851108 (-)
LOC110512609 LOC106579779 coding upstream 119589 19877497 ~ 19895848 (-)
g6f-like-b g6f-like-b coding upstream 156612 19914520 ~ 19931740 (-)
LOC110512652 riiad1 coding upstream 256684 20014592 ~ 20018502 (-)
G232999 NA non-coding downstream 15980 19736084 ~ 19740224 (-)
G233001 NA non-coding downstream 80430 19674396 ~ 19675774 (-)
G232978 NA non-coding downstream 112213 19643780 ~ 19643991 (-)
G232976 NA non-coding downstream 113573 19642393 ~ 19642631 (-)
G233080 NA non-coding upstream 53855 19811763 ~ 19813710 (-)
G233082 LOC106605400 non-coding upstream 60385 19818293 ~ 19821202 (-)
G233090 NA non-coding upstream 94324 19852232 ~ 19852446 (-)
G233064 NA non-coding upstream 105390 19863298 ~ 19863882 (-)
G232980 NA other downstream 107575 19648086 ~ 19648629 (-)
G231652 rn146 other downstream 1154329 18599730 ~ 18601875 (-)
LOC110503747 lars2 other downstream 1625150 18093704 ~ 18154474 (-)
G233513 LOC106561082 other upstream 793875 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 890863 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 1420689 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1687580 21438546 ~ 21455972 (-)
G234600 NA other upstream 1711753 21469661 ~ 21469945 (-)

Expression


Co-expression Network