G233082 (LOC106605400)


Basic Information

Item Value
gene id G233082
gene name LOC106605400
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19818293 ~ 19821202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU266465
TTTATTGGTCAGTAAATAAAGACACATTTAACTCCTACATACAAAGATGTAGATGGACGAGCAGCATTAAAACAATCAGTTCACTCCTTTCTCTAGGATTGAAGAAATGTCCCTTCAGCAATCACAGCTAGTGAAGACCTGGTATATTCAACATTACCCTCGTGcaatagacacacacatatatatgttaTCTTTATACAAAGGCGAGAGGATGGCTATTAatcagtatacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactcatttttcaaccactccacaaatttcttgttcacaaactatagttttggcaagtcggttaggacatctactttgttaatgacacaagtaatttttccaacaattgtttacagacagattatttcacttataattcactgtatcacaattccagtgggtcagaagtttacataaactaagttgactgtgcctttaaacagcttggaaaattccataaaattatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggccgaccttcaaactcagtgcctctttgcatgacatcatgggaaaatcaagagagatcagccaagacctcagaaaaataattgtagacctccacaagtctggttcatccttgggagaaatttccaaatgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagacgcgttctgtcgcctagagatgaacgtactttggtgcgaaaagtgcaaatcaatcctagaacaacagcaaaggactctgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtccgatatcgacataacctgaaaggcttctcagcaaggaagaagccattgctccaaaaccgccataaaaaaaggcaGGTTaaagtttgcaactgcacatggggacaaagatcgtactttttggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggccataataaccatcgttatgtttggaggaaaaatgggaggcttgcaagccgaagaacaccatcccaaccgtgaagcacaggggtgtcagcatcatgttgtgggggtgctttgctacaggaggcactggtgcacttcacaaaacagatggcttcatgaggatggaaaattatgtgtatatattgaagcaacatctcaagacatcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaggcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattgaagtgaccatcacaaagccctgacctcaatcccatagaaaaagcatgtgcgagcaaggaggcctacaaatctgactcagttatacaccagctctgtcaggaggaatgggccaggggaggcttgtggaaggctacctgggaacgtttgacccaagttaaacaatttaaaaggcaatgctaccaaatattaattgagtgtttgtaaacttctgacccactgggaatgtgaggaaataactaaaagctgaaataaatcactctacttttaatctgacatttcacattcttaaaataaagtggtgattgtaactgacctaaggcagggaatttttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtagatgaagGATcagggagggaagagacagaTAAAATAAATACGACTGGGATAGGCAGTAAATTATCTCATGTAtattgctgtctcttctctctgttacctcatatttacatttttttttataaacaaatCTATTCAGAGCATTTCTCTGCATGTATTCTCTACCCTCAAACATAGGAATAGATTTCCATATCTTGGGTTTGTTTGTCTTCTTATCTGAGTGAATACATTCTCAACTATCTTGTCTAGTTGGTCATACAGGTGGATGTCTCCTCTCACCAGCCTTTTACATtggcgtcccaaatagcactctattccctacatagtgcagggctcttgtcaaaagtaggcaatagggtcccatttgggatgctgccacTGTCTCTTGTACATCCGAatcctcattctcccctctctcagGTGTCTAATGGTCTCCAGCCCCTCCagggtagtagtactgtagttacCACTCCTGTGAGGCCTGGTCCTGCTACTGTTCTCTATACAGGTGGAGGTGGGTGCTGCATGCTATCACACacgccatcacacacacacgggtgTCGTCTGTCTGCGGTCTTCTCTGGAACTGTAATGCCTTCTTCTCCCTGGCCCTGTAGACAGGGTCATATTAACCTATCTGAAGAAAACAGACTAAAACAGGGAGGGtttacctgaacttgtccaacactagtttttgttttctgttgcataATGTTTTGCTACAGTATGCACTAATGAATACCACCCAGGTGAATTTTGTTTTTCTGTTACGTTCTCTTCCTGCCACTGGCCTGGCCTTTGGCTCCTGGCTGGGCCCTGGGTTTGGGGGCTGAGAGGACATGGGTTACCAGGTCCACTCTCTGCTGTAATATACCAGTTAGCAGGAACTCAGCACTGAGGAcggggagagaagcagagagtgCAGGAGCACAGAGAGACCAGTCCTCCCCACACGATATCACTAGGGTCCGGGCCTGGGCCTTCTGAGTGGAGGGCATCTTGGAGAGGAAGCGAGCTCCGCTACAGACAATGATGTCCTTCATCTGGGCTGGCTCTGGCAACACTGACCTGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266465 True 2890 lncRNA 0.60 2 19818293 19821202

Neighbor

gene id symbol gene type direction distance location
LOC110512480 flot1 coding downstream 32732 19762376 ~ 19785561 (-)
LOC110512409 LOC106605396 coding downstream 150828 19655283 ~ 19667465 (-)
rims2a LOC106579570 coding downstream 165727 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 coding downstream 535925 19065512 ~ 19282368 (-)
LOC110511207 oxr1 coding downstream 794141 18826879 ~ 19024152 (-)
LOC110512516 LOC106579712 coding upstream 21508 19827342 ~ 19851108 (-)
LOC110512609 LOC106579779 coding upstream 56295 19877497 ~ 19895848 (-)
g6f-like-b g6f-like-b coding upstream 93318 19914520 ~ 19931740 (-)
LOC110512652 riiad1 coding upstream 193390 20014592 ~ 20018502 (-)
dnah5 LOC106579813 coding upstream 202708 20023910 ~ 20090697 (-)
G233080 NA non-coding downstream 4583 19811763 ~ 19813710 (-)
G233052 LOC106605397 non-coding downstream 60385 19756204 ~ 19757908 (-)
G232999 NA non-coding downstream 78069 19736084 ~ 19740224 (-)
G233001 NA non-coding downstream 142519 19674396 ~ 19675774 (-)
G233090 NA non-coding upstream 31030 19852232 ~ 19852446 (-)
G233064 NA non-coding upstream 42096 19863298 ~ 19863882 (-)
G233096 LOC106579727 non-coding upstream 50064 19871266 ~ 19872229 (-)
G233098 NA non-coding upstream 77239 19898441 ~ 19920613 (-)
G232980 NA other downstream 169664 19648086 ~ 19648629 (-)
G231652 rn146 other downstream 1216418 18599730 ~ 18601875 (-)
G233513 LOC106561082 other upstream 730581 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 827569 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 1357395 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1624286 21438546 ~ 21455972 (-)
G234600 NA other upstream 1648459 21469661 ~ 21469945 (-)

Expression


Co-expression Network