G233096 (LOC106579727)


Basic Information

Item Value
gene id G233096
gene name LOC106579727
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19871266 ~ 19872229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU266480
GTATCCAGGACATCCTCATCTGTAACACAGGAAGTGAACAAAAATCACTGGGCAGAATACTCCATTCCACTGTAAATGATCATCATTTGAGAGAAGATCTTACCCTGTCTGAGGGTGACCTTGTCAGTGGAGACGTTGAAGCGCTTGGCAGCTTTATCTCTGGcgtcctcctctgtcctcccactCACCCAGTAATGACCATCCATGTCCTCTCCTGGTGTGACTGAAGGGTCGTTCACAGTGACAAAGTAGGCTGGGATCCTGTGACCCCACCACAGCTGACGAGAGATACACCAGtccCTGATGTTGTCCAACCAGTTGAACCAGGTCTTATGGTGGTGGTCTGGGATGATTTTGAGTCTTCCCTCCCGGACCGAGTCAGCTGCCTGCTTGCCCATGTCAGCACAGTCCACATACCACTGAGGCTTCAGCAGGGGCTCCAC

Function

NR:

description
PREDICTED: valine--tRNA ligase-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266480 True 443 lncRNA 0.61 3 19871266 19872229

Neighbor

gene id symbol gene type direction distance location
LOC110512516 LOC106579712 coding downstream 20158 19827342 ~ 19851108 (-)
LOC110512480 flot1 coding downstream 85705 19762376 ~ 19785561 (-)
LOC110512409 LOC106605396 coding downstream 203801 19655283 ~ 19667465 (-)
rims2a LOC106579570 coding downstream 218700 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 coding downstream 588898 19065512 ~ 19282368 (-)
LOC110512609 LOC106579779 coding upstream 5268 19877497 ~ 19895848 (-)
g6f-like-b g6f-like-b coding upstream 42291 19914520 ~ 19931740 (-)
LOC110512652 riiad1 coding upstream 142363 20014592 ~ 20018502 (-)
dnah5 LOC106579813 coding upstream 151681 20023910 ~ 20090697 (-)
LOC110512703 LOC106579851 coding upstream 390297 20262526 ~ 20270372 (-)
G233064 NA non-coding downstream 7384 19863298 ~ 19863882 (-)
G233090 NA non-coding downstream 18820 19852232 ~ 19852446 (-)
G233082 LOC106605400 non-coding downstream 50064 19818293 ~ 19821202 (-)
G233080 NA non-coding downstream 57556 19811763 ~ 19813710 (-)
G233098 NA non-coding upstream 26212 19898441 ~ 19920613 (-)
G233136 LOC106579633 non-coding upstream 89504 19961733 ~ 19997877 (-)
G233366 NA non-coding upstream 477408 20349637 ~ 20349902 (-)
G233430 NA non-coding upstream 563314 20435543 ~ 20444642 (-)
G233052 LOC106605397 other downstream 114648 19756204 ~ 19757908 (-)
G232980 NA other downstream 222637 19648086 ~ 19648629 (-)
G231652 rn146 other downstream 1269391 18599730 ~ 18601875 (-)
G233513 LOC106561082 other upstream 679554 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 776542 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 1306368 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1573259 21438546 ~ 21455972 (-)
G234600 NA other upstream 1597432 21469661 ~ 21469945 (-)

Expression


Co-expression Network