G233136 (LOC106579633)


Basic Information

Item Value
gene id G233136
gene name LOC106579633
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19961733 ~ 19997877 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU266528
AATacaacaaaacaaatattttaaaaaatagaaAGACATGACAAATAGTGACAAATTCTAGAATGTtcctttaaaaaatgaatggtgaATAAAAAGCACATTTTGTGGTAAGATTGTTTTGTGTGCACCGCGCACCATTTTGTGCAGTAAAAGCACATGAAGCCTGTTGTGGCGTAGTAGTCACAGCAAAGCAGTGGAGAAATAAAGCACTCCAAAAGCATTCATTATAAAGCACTGCAATAAGAGAGAAAAAGATAAGGACTAAGCATTGATACAGAACAGAATAAATCCTTCATGCTTGGCGCTGACAAATAGAACACGTGACACCATAAATTAGTCATTCTTTCCGctagatactgtatttatatatttatactaTGTACATGTCAGGGGGGAGCGATCGAGACAGACAAGGAAGCTAAGGCTTGGATTAGTCATCAGTGTTTAGAGCCAGAGGACGACGATGTGGATTATCAACAACTACTAActaactacctacctaccacTGTGCTAGCTCCAGGTCATGGACATTACGTCAACTCTCTAAAAGCATTTTCATTTTAAAACCTTTGTGCCAACCAGTACAAGAGGAGGTCAAGAGAAGATTCCCAGAAAACATTTACTTCAAAAAAACAACTGAATGTTGTAAACGACTGAAGACATAGTTGGATAGTGATTTTCTAGAAGCATTTTACTTCGGGACCAGTCTGTGGAGGTCAAGTTTGGCCAATTGGGTATTTTATTTTGGGAAAGCAGTAAAACGCAgcactcacagagagagagagagagagcaacagtacAGATGATTCTCATAAAGTGTTCTTAGCACACATTCTCCTTAAAATCCCTGACATTGGGcaagaggagtgtgtatgtggctctctcccagtctctgggGAACAGAAGGATCTGTGAATGTGCTGACAGAGTTCTGACCATCGAGCTTAGTTGGGACCACTGAGTGTTTGTGTGCGTTTGGGAAGTGTCTCTCCTACTAGTTCCctctttctgtgtgtgcgtgagagagagagatcaggctgCAGGGGACAGTgtacagtaatgtctcctctaACTCCCTATGCTAAGAGACAGAGGGGGCAGGAAATGGGGGTTACATTAGGGTTACACACCCTGTGGCAGTGACAGATGTCCCAAAGCCCCTGAGCCACACACACAGCGCTGACTCAGAAACCACACACAGCGCTGACTTAGAAACCACACACAGCGCTGACTCTGTGGGAGCTACTCTATCTGataaatagtgtgtgtgtttatgggtgaAGTAAGTATGCTGATTGAGTTTAGTGAGCCTGTCTAATCCAGTTATTTCAGTCATCATCCTGGCTGAAAAACTAAAATGTTTACATGTATTTAATAGCTGAAGATGTGCATCTTATACATCCTACACCTTTTCATTTAAGGGTTGTCTATTCAAGCAGTTACATTCTGAGTACAGTATTATTGGCTCCGATTGAACTTTGACCTTGGCCAAACCAGGAAATGAGTTCCACACGACAACATTGACTCTATACAGCAGTTATTTACACTGATAAATATCCACATTTTTTTCCACAGGAGTTCGACAAGAAAAATAAAGATCCGTACATATATAGTATACAGATACCTCacaccaaaaaatatatacaactttctctcctactcctccttcaCATTACAAACCGAAGGACATTATCTATATTTCTCCAAAGACACACTTAATCACCTTCATACAAATATAACTAGTGGGCATATCCTGTTTTGGTGTTACACACAAGTGCAAAGATAGGAGATACATGTTTGTGTTAGTGGTCATGATAAGTAGTTCATTACAGGCCTCTACGCTGACCTTTTTTAGGAGCACGTGTGTGGCTAAGTTGAAAAATGTAGGTGCACACAAAGAAATTTAGGAACACAGTGAAAAATATTTGAGGTAATGAAGCTAGAATTCAAAACGGTTCTCAGCACACTGGGGATGCAAAATAAAAATTATATgtcgcacagcaaaatatttaggcGCATATGCGAGTAAAATGGTTGCAATGTTGAGCCCTGCTTCCTGCATGTGTACTGtatctataatgtgtatgtaagTCAGAGTTTTGGCCTATACTGAGGCCATAATGCTATCAATCTATTATAATTGACATACTTAGGCTATCGTGTTATCAAGTGCTGATGGTTAGGCGAGTCGCACAGTGGGTCAgtatccatcccttcctcccagtctccccctctctgttcctttctctcccccaCACCAAGGTCAACCTCCACCACAACAGTCAAGGTCATCCTGGTACACTACTACATGTCGCTCTCTCACCAGAGTgcgtgtgtaatatgtgtgtttCACTGTGAACCCTATGGGTTAAAGTTAAAGTGCCCCATTAGAGGGGCGACCCACAGGCACCCTCCACGCCCTCAGCGGTAAAACGCACATCGTTTGACCCCATGACCTCTGGCTGGTCGTGACTCAGAAACAGACCCAGGCTTAATGGGCCAATCAGGTGCCTCATCTGGTCAGGGCGGCCAAGGAAACCCCACTGATTAACCAGGGAACACGATGAATCACAGGGGAGTCATGAGATAGGAGTTGTGAAGGGGCTGATTCAGAGGGGATTCAGATCTGGGCTATTGAGGGTAGGAAAGTAAGGCTCTTCAGGAAGACAGCTGGTCATAGCCTTCCAGTGGTCGTCTGTTTGCCTctagtgatgtgtaatagttgTACATGGTGATATTGGCTTGAACAGCCCTCGACTGTCTTGTTAGAAAGACAAATTAGTCACTAAACTATCAGGCTCCGGTCTGTCTGAATCATGAAGGATTATACCCAGACCTCTGCTAGTCAATGTAGGTCCTATAACAGGTCATTCACCCCCCTGTGTATGCACAGAATCAATCAATTCATTTATATCTTAATTAGCTACAGATGCAAATATGCCATCATGTATTTGGATTTCTATATACCTTGTGATTGTATAGATTGACAGAGCAACATATACAATGGGATAGGAGGAAACCTTACTAATCAAACTATGAAAGCCAAGATGTACAGAGAGCAGGGCATGACTCCATGGCTTTCTGAGTCAGGTCAGGCAGGAGGAAGGGGGTACAGTAAGTGGGGTGTTTGACACGTAGGGAGGGAGGCAAGAAAtactccctctgctctccctgtaTCCCTGACCTCCCCACAGCCCTGtgtaaattacacacacacacacacacacggtagagagaggtgatggagaaagtctggtggaggagagagagacagtgagggagagaaggagagaggtgatggagagagacagaggtaagaGACAggatgtgtacatataggtagggggtaaagtgactaggaaacaggatagataatacacagtagcAACAGCGTATGTTGTGAGTGtgaaagtgtttgtgtgtggggcaTCAGTATGCATGCGTGCGTATGTTGTGtatgtgggcgtgtgtgtgttttcctcctGTCTGTTTGCATACCAAAGCTTGTTTGCTTACATGCTTT
>TU266529
AATacaacaaaacaaatattttaaaaaatagaaAGACATGACAAATAGTGACAAATTCTAGAATGTtcctttaaaaaatgaatggtgaATAAAAAGCACATTTTGTGGTAAGATTGTTTTGTGTGCACCGCGCACCATTTTGTGCAGTAAAAGCACATGAAGCCTGTTGTGGCGTAGTAGTCACAGCAAAGCAGTGGAGAAATAAAGCACTCCAAAAGCATTCATTATAAAGCACTGCAATAAGAGAGAAAAAGATAAGGACTAAGCATTGATACAGAACAGAATAAATCCTTCATGCTTGGCGCTGACAAATAGAACACGTGACACCATAAATTAGTCATTCTTTCCGctagatactgtatttatatatttatactaTGTACATGTCAGGGGGGAGCGATCGAGACAGACAAGGAAGCTAAGGCTTGGATTAGTCATCAGTGTTTAGAGCCAGAGGACGACGATGTGGATTATCAACAACTACTAActaactacctacctaccacTGTGCTAGCTCCAGGTCATGGACATTACGTCAACTCTCTAAAAGCATTTTCATTTTAAAACCTTTGTGCCAACCAGTACAAGAGGAGGTCAAGAGAAGATTCCCAGAAAACATTTACTTCAAAAAAACAACTGAATGTTGTAAACGACTGAAGACATAGTTGGATAGTGATTTTCTAGAAGCATTTTACTTCGGGACCAGTCTGTGGAGGTCAAGTTTGGCCAATTGGGTATTTTATTTTGGGAAAGCAGTAAAACGCAgcactcacagagagagagagagagagcaacagtacAGATGATTCTCATAAAGTGTTCTTAGCACACATTCTCCTTAAAATCCCTGACATTGGGcaagaggagtgtgtatgtggctctctcccagtctctgggGAACAGAAGGATCTGTGAATGTGCTGACAGAGTTCTGACCATCGAGCTTAGTTGGGACCACTGAGTGTTTGTGTGCGTTTGGGAAGTGTCTCTCCTACTAGTTCCctctttctgtgtgtgcgtgagagagagagatcaggctgCAGGGGACAGTgtacagtaatgtctcctctaACTCCCTATGCTAAGAGACAGAGGGGGCAGGAAATGGGGGTTACATTAGGGTTACACACCCTGTGGCAGTGACAGATGTCCCAAAGCCCCTGAGCCACACACACAGCGCTGACTCAGAAACCACACACAGCGCTGACTTAGAAACCACACACAGCGCTGACTCTGTGGGAGCTACTCTATCTGataaatagtgtgtgtgtttatgggtgaAGTAAGTATGCTGATTGAGTTTAGTGAGCCTGTCTAATCCAGTTATTTCAGTCATCATCCTGGCTGAAAAACTAAAATGTTTACATGTATTTAATAGCTGAAGATGTGCATCTTATACATCCTACACCTTTTCATTTAAGGGTTGTCTATTCAAGCAGTTACATTCTGAGTACAGTATTATTGGCTCCGATTGAACTTTGACCTTGGCCAAACCAGGAAATGAGTTCCACACGACAACATTGACTCTATACAGCAGTTATTTACACTGATAAATATCCACATTTTTTTCCACAGGAGTTCGACAAGAAAAATAAAGATCCGTACATATATAGTATACAGATACCTCacaccaaaaaatatatacaactttctctcctactcctccttcaCATTACAAACCGAAGGACATTATCTATATTTCTCCAAAGACACACTTAATCACCTTCATACAAATATAACTAGTGGGCATATCCTGTTTTGGTGTTACACACAAGTGCAAAGATAGGAGATACATGTTTGTGTTAGTGGTCATGATAAGTAGTTCATTACAGGCCTCTACGCTGACCTTTTTTAGGAGCACGTGTGTGGCTAAGTTGAAAAATGTAGGTGCACACAAAGAAATTTAGGAACACAGTGAAAAATATTTGAGGTAATGAAGCTAGAATTCAAAACGGTTCTCAGCACACTGGGGATGCAAAATAAAAATTATATgtcgcacagcaaaatatttaggcGCATATGCGAGTAAAATGGTTGCAATGTTGAGCCCTGCTTCCTGCATGTGTACTGtatctataatgtgtatgtaagTCAGAGTTTTGGCCTATACTGAGGCCATAATGCTATCAATCTATTATAATTGACATACTTAGGCTATCGTGTTATCAAGTGCTGATGGTTAGGCGAGTCGCACAGTGGGTCAgtatccatcccttcctcccagtctccccctctctgttcctttctctcccccaCACCAAGGTCAACCTCCACCACAACAGTCAAGGTCATCCTGGTACACTACTACATGTCGCTCTCTCACCAGAGTgcgtgtgtaatatgtgtgtttCACTGTGAACCCTATGGGTTAAAGTTAAAGTGCCCCATTAGAGGGGCGACCCACAGGCACCCTCCACGCCCTCAGCGGTAAAACGCACATCGTTTGACCCCATGACCTCTGGCTGGTCGTGACTCAGAAACAGACCCAGGCTTAATGGGCCAATCAGGTGCCTCATCTGGTCAGGGCGGCCAAGGAAACCCCACTGATTAACCAGGGAACACGATGAATCACAGGGGAGTCATGAGATAGGAGTTGTGAAGGGGCTGATTCAGAGGGGATTCAGATCTGGGCTATTGAGGGTAGGAAAGTAAGGCTCTTCAGGAAGACAGCTGGTCATAGCCTTCCAGTGGTCGTCTGTTTGCCTctagtgatgtgtaatagttgTACATGGTGATATTGGCTTGAACAGCCCTCGACTGTCTTGTTAGAAAGACAAATTAGTCACTAAACTATCAGGCTCCGGTCTGTCTGAATCATGAAGGATTATACCCAGACCTCTGCTAGTCAATGTAGGTCCTATAACAGGTCATTCACCCCCCTGTGTATGCACAGAATCAATCAATTCATTTATATCTTAATTAGCTACAGATGCAAATATGCCATCATGTATTTGGATTTCTATATACCTTGTGATTGTATAGATTGACAGAGCAACATATACAATGGGATAGGAGGAAACCTTACTAATCAAACTATGAAAGCCAAGATGTACAGAGAGCAGGGCATGACTCCATGGCTTTCTGAGTCAGGTCAGGCAGGAGGAAGGGGGTACAGTAAGTGGGGTGTTTGACACGTAGGGAGGGAGGCAAGAAAtactccctctgctctccctgtaTCCCTGACCTCCCCACAGCCCTGtgtaaattacacacacacacacacacacggtagagagaggtgatggagaaagtctggtggaggagagagagacagtgagggagagaaggagagaggtgatggagagagacagaggtaagaGACAgggtaaggagggaggagaggagagcgaggagggagagaaaatgtCCACGTCATACCATCTAAGCGGTGgtaatttggtgtgtgtgtgtgtgggcttaaATGAGCATTGACTTCACGGCTCATTAGCAATCAAACTCTTCCTGTCAGGAACACCACAAGGAGGGAGGGATcaaatggaggagagggagaacagcCTGCTGTTTGAGCCGTCCCTTTTTCTCCCTCTATCAATTCATCCTaatccctctctccccgtctctccggacatgagagaacagctgtatggtttccctctctcctatccctctATCAGTTCCCCTTTCATGCACGGTCTTCATCTAGATGACTACCCCTCCTTCAGTAAGTTGTTTATCATTTCAGAATGTCCCAAACTAAATTCTGCACATACTTCCAGTTGGTGGCACAATAGCAGAGAGAAAATTAGGTAGAAAGAGGAGGCCTTCTGCAACATACAGACACTAGAGAGAGTTTGACATTTTACTTATAACCACAACTACATCGACCACTTCCCCTGCCAAacttcctgttcccttccccagtACTGTCACATACAGCAGAAACAAGGCTACTGTAGCCGGAACAAACGTTgtcccacaggagagagacgagaatagcagggagcagggagcatcGTGACACCCCTTACATTGCTACTGTGCATTTAGTGGAGATAAGAGTGAATATTTTAGTGAGGAGTTTCTCTATCTAGCGAGGGAACGGCTGCATGGAGATGCCATTTTACCCACAAGTCCCTACTACAATGTGTCTCTCTGGAGGCTTCAATCTCTAAGGTCCCTAAACTAAAGAAATGAGGAACACAACAGACAGAGCAGCGATGTGAGAAAGATAGTTTCAGGATTTCTTTCATTGTTTTGGTAGATAGATATCAAGTGATCCACTTTTCATATTGGGACCAGAGAAAAATAGTTGTTTTATCAACGCACCAGTCCTCCATCTTGTTTCTGTACATTCCCTCCCTCAGCCACTTCATTCAGTTCATCTTGTTTCTGTACATTCCCTCCCTCAGCCACTTCATTCAGTTAATCTTGTTTCTGTACATTCCCTCCCTCAGCCTCTTCATTCAGTTCATCTTGTTTCTGTACATTCCCTCCCTCAGCCACTTCATTCAGTCCATCTTGTTTCTGTACATTCCCTCCCTCAGCCACTTCATTCAGTCCATCTTGTTTCTGTACATTCCCTCCCTCAGCCACTTCATTCAGTTCATCTTGTTTCTGTACATTCCCTCCCTCAGCCTCTTCATTCAGTTCATCTTGTTTCTGTACATTCCCTCCCTCAGCCACTTCATTCAGTTCATCTTGTTTCTGTACATTCCCTCCCTCAGCCACTTCATTCAGTTCATCTCGTTTCTGTACATTCCCTCCCTCAGCCACTTCATCTTGCTATCTCTATGGGCTGCATGTTTGGTCGTTGTTAATATATTTCAAATGATCCAACAGAGGAGAACCCAACACCACCGACTCCTCTAGAAGGAGGACATGTTCATTCATCCTTTCCTTCTTCCATCCCgctttcccttcctcctcctcttcctctgcccgTTCTCTCTACACGTACACGGCAGTCCGTGAGATGACCGACCCGTCGCGCTGAGACTCCATGTCGTCGTCAAGGTAACCGCTCATGATTCCGTCCTGGTCATGTGGTGGGCGGAGTTGCAGGATGGGCCCGCCCCCTCCAAAGTGGTCGTAACTCTCCTCGTCGTCCTCCAGCTGGTCAAACTTCCTTCGCTCTGCCTCGTCCAGCTCGCCGCTCAGCAGGATGTCCTGCGCAGTGGGCGCCGTGGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266528 False 3523 lncRNA 0.49 2 19961733 19997877
TU266529 True 5148 lncRNA 0.44 2 19992685 19997877

Neighbor

gene id symbol gene type direction distance location
g6f-like-b g6f-like-b coding downstream 29993 19914520 ~ 19931740 (-)
LOC110512609 LOC106579779 coding downstream 65885 19877497 ~ 19895848 (-)
LOC110512516 LOC106579712 coding downstream 110625 19827342 ~ 19851108 (-)
LOC110512480 flot1 coding downstream 176172 19762376 ~ 19785561 (-)
LOC110512409 LOC106605396 coding downstream 294268 19655283 ~ 19667465 (-)
LOC110512652 riiad1 coding upstream 16715 20014592 ~ 20018502 (-)
dnah5 LOC106579813 coding upstream 26033 20023910 ~ 20090697 (-)
LOC110512703 LOC106579851 coding upstream 264649 20262526 ~ 20270372 (-)
LOC110512719 LOC106579893 coding upstream 274497 20272374 ~ 20275308 (-)
LOC118944500 NA coding upstream 554876 20552753 ~ 20554867 (-)
G233098 NA non-coding downstream 41120 19898441 ~ 19920613 (-)
G233096 LOC106579727 non-coding downstream 89504 19871266 ~ 19872229 (-)
G233064 NA non-coding downstream 97851 19863298 ~ 19863882 (-)
G233090 NA non-coding downstream 109287 19852232 ~ 19852446 (-)
G233366 NA non-coding upstream 351760 20349637 ~ 20349902 (-)
G233430 NA non-coding upstream 437666 20435543 ~ 20444642 (-)
G233457 NA non-coding upstream 473151 20471028 ~ 20474427 (-)
G233460 NA non-coding upstream 483443 20481320 ~ 20481533 (-)
G233052 LOC106605397 other downstream 205115 19756204 ~ 19757908 (-)
G232980 NA other downstream 313104 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 362632 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 other downstream 679595 19065512 ~ 19282368 (-)
G231652 rn146 other downstream 1359858 18599730 ~ 18601875 (-)
G233513 LOC106561082 other upstream 553906 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 650894 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 1180720 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1447611 21438546 ~ 21455972 (-)
G234600 NA other upstream 1471784 21469661 ~ 21469945 (-)

Expression


Co-expression Network