G233430


Basic Information

Item Value
gene id G233430
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20435543 ~ 20444642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU266841
ATTTACAGATCGAAGCAAAGCACAGTATGAATACAGGATCTTTCTCTTAAAAAGAGATACAGGTTCTTGTTTTTTTGCATTCCCTGAAATACATAATGGTTTATAtttatatagatctatatatattTGCTTTACTCCTTTGTACAGTCACTGTATCTTGCATTGTGACAATATATGCAAAGCACAAGAGTCATTTTCGATCACTGGAAAAGGTTCCCATGAACGGTCCAAAGTCAGCTCTGGTTTAGTGCAGAGAAAAAGGTCATCAGAGGCACCTGCTGCATTTTAGGCTTCTTGGGACAAACAGACTTACACAAGAGAAACGAGGACACCTGTGCTAAACTACTGGTATTCTGAAAGAACATCATAAAGGCCGAACATCATAAAGGCCAAACTACTTACTAAAGAAAAAATGATTTGGTGAAATACTATTAACCCCAAGTTGATCAACAGAACTACACAACATCGCACATACAAAATCTCACTGGTCTGACGATATGACCAGTTTTCAACAGGCTCCATGTCAACCCTGAGCAACCCAGTTACATTCATTTCTCTGAAATATAAAAAAGTACATTTACTTAATTCACTTTCATCAGTTCACTACTTTGCAGGTGATTCAATGTCACTAGTAACATTCTAGTTCATAGCAAGACACTATGTGAGAGAACTCGCCTCTGAATACAAAAAACACCTATCTGTATCTAACAGGCCTAAACAGTTAGTGTTGAGAAGTCAGTGATGTCTGAGTAGCTTAGGATGACTTGCAGGAACTATGAAAAGATGTACACCGTATGCCCAAGCCAACTCCAGTTCCATACCAGCAACATTTCAATATTACAGACATTTGTGAAGAGGTTTTTACATGACAAACATTTAAGAAATAAACTCGATATGCACATTAAACCAAATGATAAAAATAAATCAAGTTTCTTCATTTCATAAGTAGTTAAGAGTAAGCCAATGCGGTAATAATAGTGATCTGTAACCTAAATACAGTGTTGCATCTACATGGTTTCATATGCTAATATGGTACATTGATTCAATACACAACTTTTACATGAGTTGCATATTGCATTGTACAGCTAAGATTACCACCGGAGGAGGCAATTCTAACTGATTTCTACTGAAATCATTATGACCAATGGGAAGCTATATTGTCCGACGTTTTGACCGAATTTAGCAAAGGAGAAGTAAGCAGCTTTGGCACCTAACCTGCTCATTGTATAGTCATAATGATTCCACACCCAGAGCCATACAttaacatatattatatattcaTGGCTCTGGTCACACCCAATAAACAGTGAAGTGTAGCTCTGAAGTTACTCTCAAAATTCTATAGAAAAGGGTACTGCAGTGGGCATCTAGTGGTGCCATCACATCCAAGCCTTTCTAATTGGATAATACACACTACGCTGTGGAAAATACTTGGCCATTTAACGTACTGTACACCAATTCCTTTTTTGCAATTGTGGCTCAAGTATTGTAAAGGTATAGCTTCACTTCTGACACAAGAAACAAAGTTCTGATTAACGCAAAGTTTAAAGAGTGAAAGTTCTGTAAAATGGAAGACAACTAACTGTAATGAAATGGGACAGAGCAACTGAACTGACAGCTCAAAAAACAGTGTGTATTTGAAAATCAACTCATGAATTAAATATCTAGATATGAAATGAATTTGATTGACATTATCAGTGAAAGTCACACTTAAGAAGATGTTAAATGttgaaatatgtaaaaaaaaaaatacatgtaatcttCTTCAACCTGTGTTTGAAATATTCTTGAGGGGTTCATGTGAAAAGATTTCCTAAATGTAGAAGAATGTGTGAGAGAAAGGCATTAAACTGAATATCGATGTGAAACGCACTGTGACTGAAATATTAGTGACTTTTATTCCCCACACTTTTTCTACTGACACCAATTTGGAATGAAAACCATGACATTAGGGAACACCACTTGAATGTTACTTCATAGTAAGTGTTGGTGATAAAATAGTTTGAGTGTTCAAACATAAAAAAATTATAGGCTTTGTAATAGATGCTTTGTAATAATTACGCGGTTCAATCATTCCATGGTAATGATAAAACAGTAACGAACAGCACTGAGAAAAGAGCTACATTTCAAGTAATCACTCACATCCAGGTATATAAATAAATTTGCATAACAATACTTGAAATGATTGAGTCATTGCATCTTATTTTTTGAAATGTCATTGTGCAGAACTTGTAGATCGTGTGGCTAATATTCTGTATCTGAATCTATCCAGCTTAAGACACTATAAATAAAAAGATGGCTCTTTCTTAATGTTGCGTTACAGGTAAAAACATCTTTACAAATCTGTGTGTTCACTGCAACCTTGGACGAGGCTGGACAGTAAAAACCCTTCCACTTCAGGGTATTATCCATTACTAGGGCTTCACAGTGTCTGTTCTAAAAACAATCATTCAATCACATCATGGAAAAGAAAAGCAACAAGTCTAAAATTAATAGACTTGgggtgaatcccaaatggcactctatttccgatatagtgcactacttttgaccaaagccttacgggccctagtcaaaagtaaggtaatgcactatgtagggaatacggtgccatttgggatgcacccttgGATTAAGAAGATGGGTCCTTGTAGCAGATGAGTCGATTGATTCCAGTTGCATTCTACAGACAgcacaacagacagaccagaccgacCTTGGACTGTACACGTCAACTCTGAGCTAGTCAGATCCCTCTAGTGGATCACAAGAGCTTGATGTAGTGGTTATATTTCCCTGTGTTCTGACGGAGGGAATGCAAACAGGTGGGTTTAAAAGAAAACTGTGGCACCCTCCCGCCCCAGTGGCCTGTTAGATTTTACTCATATAATCATAACCATGTCTTCAGAGTGCTTACAACATGGAATTACAGTCCACAAGATGGCCATATGCTTTCCAATGTTTTACATATAGCTTTATTATTGTGTTGACACCAAGAGAGACCCAAGAGCAGAgctgttatgttgcttgttatcACCTGAAGAGCAGCATGGTAGCCTAGTGTCATTCTGAATACGTACTGTAGCCAACAATAGAAGGGTTGGTTATAGCACACGGTATAGGACTAGGCTAGCAGCGTGGACCTCAACAGCTATCTATGGACTTAAATGAGTGGATGAGACGGGGAGTGAATGAATACCTGTAGTAGTTTATATTTTGGGGGGAAGTTCATGTGGAACACCGGATGGTGAAGCTGATGATGGATTGATTTAACACTGAACTGGATGTAGTGATTGAGTTGTTGTTGTGTGACTGTTAGAAATCTATACGCTCCAGACTACTGATAAGAAACTAAAACGGACTAAGAACACATTTGATGCAGTACTAAAATGTCATGAATACAAACGCCTGTGAGGTcaccaaagaaagaaagaaagaaagaaatgaagAAAAGTCCTATGAGAGTGGAATGAATGGATCCTGTGTAGTCCTTGAGTATCCTTCAGCTCCATCCTAAGTTACCAGCTCCAGCCTTTCCTTTCCTACAGCTTGACAGAGACAGCTGGCCTCGTGATCTGTCTCGTGATGTTCTTTTTACGAATATCAGAttgtccatccatccctccaacaCAGGAGGGATTTGCCATTGTTGGTAACGAGAAGAATGAGACAGTAGAGGAATTCTTCTTCAGTCAGTGTGGAAAGGTCTGTTCCCAGTTTCACAAGCGCCAAACTAGAAAACAATCAGCTTTTCAAAAACAGGTTGTAGTATAGATGATTTGTAACAAAAAAAATACTTTCATTATGTAAAAAAGTGGCCCAGACTAAACAAAGTCCTGATGATTGTACAAGGAAAATAAAAACTAATTTGATCTCATAAACTGTCACTAAACAGTGTCAGTGGATCAGAGCTTATTGGTGACTATGAATACACActtgaaaatgtttttgttttttacaagagTTAATAACAACGTGGTGCAGCTTTTTGCTTTTATTTTTGCTTCTTTATCTCCTCCTTCCTTCCGAAACACAGAGGTCACTGAAGTCCACTGGCGTCCGTCCTAACCCCCCAACCACTCCGTCCTGTTCCATCCGCAGTCTCTGGCAGCTCATGACACATCAAGAACAACAGGAGTTCATCACTTTAGCTTCTCCTAAAGTAAAAGTCTTGAGTTTGTTTTTAGGCAGAGTCCGGTCAAGTCATAGGTCAGGGGTCATAAGGCTACGAGGGTGCAGGGGTGCTTGAGTTTACAAGGCAGGACTCCTCTGTTGAGCTGGTAGAACTCCACCAGCTGGATCAGGTCGGTGAATTTGGTGGACCCGTCGTCAAGGCTGAAGAAGATCTGG

Function

NR:

description
hypothetical protein cypCar_00036750

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266841 True 4350 lncRNA 0.42 2 20435543 20444642

Neighbor

gene id symbol gene type direction distance location
LOC110512719 LOC106579893 coding downstream 160235 20272374 ~ 20275308 (-)
LOC110512703 LOC106579851 coding downstream 165171 20262526 ~ 20270372 (-)
dnah5 LOC106579813 coding downstream 344846 20023910 ~ 20090697 (-)
LOC110512652 riiad1 coding downstream 417041 20014592 ~ 20018502 (-)
g6f-like-b g6f-like-b coding downstream 503803 19914520 ~ 19931740 (-)
LOC118944500 NA coding upstream 108111 20552753 ~ 20554867 (-)
LOC110512912 LOC106579937 coding upstream 119006 20563648 ~ 20581532 (-)
trnat-ugu-31 NA coding upstream 138638 20583280 ~ 20583352 (-)
LOC110512925 NA coding upstream 145804 20590446 ~ 20595555 (-)
trnat-ugu-32 NA coding upstream 147414 20592056 ~ 20592128 (-)
G233366 NA non-coding downstream 85641 20349637 ~ 20349902 (-)
G233136 LOC106579633 non-coding downstream 437666 19961733 ~ 19997877 (-)
G233098 NA non-coding downstream 514930 19898441 ~ 19920613 (-)
G233096 LOC106579727 non-coding downstream 563314 19871266 ~ 19872229 (-)
G233457 NA non-coding upstream 26386 20471028 ~ 20474427 (-)
G233460 NA non-coding upstream 36678 20481320 ~ 20481533 (-)
G233472 NA non-coding upstream 52244 20496886 ~ 20497524 (-)
G233475 LOC106579923 non-coding upstream 55505 20500147 ~ 20500409 (-)
G233474 LOC106579923 non-coding upstream 56467 20501109 ~ 20501347 (-)
G233052 LOC106605397 other downstream 678925 19756204 ~ 19757908 (-)
G232980 NA other downstream 786914 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 836442 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 other downstream 1153405 19065512 ~ 19282368 (-)
G231652 rn146 other downstream 1833668 18599730 ~ 18601875 (-)
G233513 LOC106561082 other upstream 107141 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 204129 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 733955 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1000846 21438546 ~ 21455972 (-)
G234600 NA other upstream 1025019 21469661 ~ 21469945 (-)

Expression


Co-expression Network