G233491


Basic Information

Item Value
gene id G233491
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20529880 ~ 20533496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU266912
tcttcgTGTAAATAAAAATCTAAGACAATTATGGTACTAATAATTGCTTCTCTTACaccatatgtacagtatgtccttCAACCGATTATTTTAAAATCACACAAGTTATAAGGACAATTTAGTagctaatggcagcctgcagtatCCCGGTCATCCTTCAACTTAAATTACTCAATGAGAGAGGCAGCACTAAACTTGTCTGCAACGTCCCTTCTTGGATTAGCTCCAACTGTGCATGTTATGTCTACATGAATCTACATCTTAACTGACTTCATTTGGCTTCAATTCGCTGTTGAGTCTTCATAAAGGAATGAATGGCGTCACGTGATCGATGGCTTGGTCCACTATATACAGTCATTGGCTTGACCCTACATACCATAACTCCAAGGAAATGTTTTATTGCGAAAAGATTTATCAACATATTCATACTTGCAGACACCAGTGAATTCCTACCCAAAGAAACTAGTTTTTTCTCTTGAAGTCATATACAGTAAAGTGAACAAAGGATCAATTGTCAAGGAGCCCAATCTTTTTTTTTGTGACCAACTTTTTATTTAGTTTGGTAATTTTTCTTTTTCAAAAGAGGGATACAGGTACAAGTGCAAAATAAATGCATACAAAGATAACCCGGACCCATTCCCACCTCAGTCCCTGTCAGATATGTGAGTGAAGCGGAGTTGGAGTGGagcgtgcccaatttgactggagcttTGGCCTTCTCACTCGCTCCAGTAGCGTTCCAGTAGTGGTCACTTCTGGAGCTGAGGGCATAcccggcccagcatgcatttgtagtctacttgtgtgcttGCTTTAGACACTGTCAGAGTtcactaaatattttcataaagaaactaataaaacacacaggtgctaaatcaaggtgacttacaaagatgaggagcAAGAGAGGCGGTGCGATGATTTAGTGTCCACAACCaaagaatcattgtggaatctcaatcgcactccacactgccctttcccacctggacaaaagaaacacctatgtaagaatgctgttcattgactacagctcaccattcaacaccatagtgccctcaaagctcatcactaacctAAGGACCCTGGCactaaacaactccctctgcaactggatcctggacttcctgatgggccgaccccaggtTATAAAGGTAGGCaataacacatctgccacgctgatcctcaatacgggggcccctcaggggtgcagcttagtccactcctgtactccctgatcaCCCACAACTACGTGGGCAAGCACCAGTCCAACACCATAATTTAGCTGTCTGACAACAcaatactgtcacgccctgaccttagagatcatttttatggttctcagtcagggacagctgtctattgttgtctctgattgggaaccatacttaggtacccttttttccacctgtgtttgtgggaagttaactttgtttgatggCACATAGCCTTAAGCGTCACGGTTTGtttggtattgtttattgttttgtcggcgtcatttcttaaagtaaaatgtacgctcaccacgctgcaccttggtcctcatccTTCAACAGTCATGACATGTATCCCTACAAGGAAGCAACCCCCGTCTGTAGGTCACTTCAATATATTGTCCATTGTTCATTAATTGGTGTGGAGTCAACATTGTCTAAATGTCCTGGAACATAGGAAATAAGTCCAATGttcagcaataataataataataattgtgttGCTTTAACCCAATTGAGTGGGTttcctcatcattgtcttaggaGAACAATCTTATGAAAGGTTTGGTATTTTCTTATCGACCAGAAGCCTCGATCCAGTTCAGAAGAGATTCATTGATctaaaatctgtcattttaagaTTGCAGCCAAACGCTTATGTAAGGGATTTCTTCCATTGACGGAGaggtggaccaaagcgcagcgtggttattttgactcatgctttaataaatcacttcacatgaacaaactaagaaaaacaagaaccgtgaaaacccaaaacagccctatctggtgcaagagacaggaacaatcacccacaaacacacagtgacacccaggctacctaagtatgattctcaatcagagacaactaatgacacctgcctctgattgagaaccatactaggccgaaacatagaaatacccaaatcatagaaaaacaaacatagactgcccacccaactcacgccctgaccatactaaataatgacaaaacaaaggaaataaaggtcagaacgtgacagcttaTCTCATATAACAGACATTAAATAGATCTTTCAATCTGctattttttatttgaaaatacaAAACTCACCTCATGAACAGTCAGGGAAGAAGAGGGTGCAATTTCAATAACATGATTTGTTTGGCTTGAGGGATGTTGGCAAGATGTATGGATACAACATGGATGGGAACCACAACCAGCATAGAACAGGCATACTGTATCTGCGGCCCAAAgagcaccctcttccctatatagtgcattacctttgaccagggctcttAGGGTGTTTATAGACAATGAAGGGCTAtagtcataagtagtgcactatatagggaatagggtgccatttaagacacACCCTGTGTCTTTAGGCTGGCTGGGACCTTGAGGAGGCTTCCATGTCTGTCGCAGGCACCCCCTGCCTGGATGAAATGAATGTGCTGCTGGGTGCCTTCTGGGCCATTGGATTCACAAATCCCTGTTTAGTCTCAGTCTCTTGTCGTGGATGTGCTGCAGCAGTATCCTCCCTCTCTGCTCAACAGTGTGGATGAGAGGTTTCAGGCCACGTGCCCCCCCTCGGCTCTCCCAGAATTGCTTGTCCATATACAGAGAGCTCAGGAGCATGCTCTCCAAGCAGCCAGACTGGAGAACTGATACAGCTCTCTCTGGAACTCATCGATGCCCTCTACTAAGCGGAAGTTGAGGTTGTCATGGGGATGATTTGGCCTGCCTGCATTGTCTATAAACACTAGTCTGGTAGGCTCTACCCTCCTCACCTGTAGAAAATAAACATAGACAGACACAGTATAGTTTAGCATAAATTTTGTCTTATCAAATAGTTCAGCAGGTTCAGTGGAAAGAGGGAGTCATTTTTCCACAAAGCAGTTGTAAAAGAATAGTGATCATCTTTATCCAACATCGGAATGATCTTTGTTAAGAAGAAAAGGTCTGGATAGAAA

Function

NR:

description
protein FAM198A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266912 True 3185 lncRNA 0.38 3 20529880 20533496

Neighbor

gene id symbol gene type direction distance location
LOC110512719 LOC106579893 coding downstream 254572 20272374 ~ 20275308 (-)
LOC110512703 LOC106579851 coding downstream 259508 20262526 ~ 20270372 (-)
dnah5 LOC106579813 coding downstream 439183 20023910 ~ 20090697 (-)
LOC110512652 riiad1 coding downstream 511378 20014592 ~ 20018502 (-)
g6f-like-b g6f-like-b coding downstream 598140 19914520 ~ 19931740 (-)
LOC118944500 NA coding upstream 19257 20552753 ~ 20554867 (-)
LOC110512912 LOC106579937 coding upstream 30152 20563648 ~ 20581532 (-)
trnat-ugu-31 NA coding upstream 49784 20583280 ~ 20583352 (-)
LOC110512925 NA coding upstream 56950 20590446 ~ 20595555 (-)
trnat-ugu-32 NA coding upstream 58560 20592056 ~ 20592128 (-)
G233479 NA non-coding downstream 21515 20506750 ~ 20508365 (-)
G233478 NA non-coding downstream 24254 20505226 ~ 20505626 (-)
G233474 LOC106579923 non-coding downstream 28533 20501109 ~ 20501347 (-)
G233475 LOC106579923 non-coding downstream 29471 20500147 ~ 20500409 (-)
G233472 NA non-coding downstream 32356 20496886 ~ 20497524 (-)
G233514 NA non-coding upstream 18719 20552215 ~ 20552450 (-)
G233914 NA non-coding upstream 120701 20654197 ~ 20654460 (-)
G233917 NA non-coding upstream 122705 20656201 ~ 20656503 (-)
G233942 NA non-coding upstream 168709 20702205 ~ 20709007 (-)
G233955 NA non-coding upstream 196326 20729822 ~ 20730058 (-)
G233052 LOC106605397 other downstream 773262 19756204 ~ 19757908 (-)
G232980 NA other downstream 881251 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 930779 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 other downstream 1247742 19065512 ~ 19282368 (-)
G231652 rn146 other downstream 1928005 18599730 ~ 18601875 (-)
G233513 LOC106561082 other upstream 18287 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 115275 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 645101 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 911992 21438546 ~ 21455972 (-)
G234600 NA other upstream 936165 21469661 ~ 21469945 (-)

Expression


Co-expression Network