G233521 (LOC106579937)


Basic Information

Item Value
gene id G233521
gene name LOC106579937
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20558776 ~ 20565712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU266948
gtaaatattttcttcttcttgaactacactgttggttaagggcttgtaagtaagcatttcacggtaaagtctacacttgtattcggcacatgtgccaaataaagtttgatttgacttgatatgtccattgctcatgtttcttggcccaaacaagtcttttcttgttgttgttgtcctttagtagtggtttctttgcagcaaatcgactatgaaggcctgattcatggcgtctcctctgaaaagttgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatttctgaggctggtaactctaatgaacttatcttctgcagcagaggtaactctgggccttcctttcctgtggcggtcctcatgagagccagtttcatctttgaccttgatggtttttgcgactgcactttgagaaactttcaaaattcttgaaGTTTTCTGGATTGACTAatcttcgtgtcttaaagtaatgatggactgtcatttctctttgctttttcgagctgttcttcccataatatggacttggtctaaaaaaaaacctggaatgagtaggtgtctccaactggtactggtactgtatataaaataatGTTGCTTTATTCAATAACTCAGTTACTCAATACTTACTGTTTTATCATTATAGTAAACATAATACATGTACACTAGTTTCTGGCACACTTCAGTCTtagcaaatatattttttttactggaGGTGGTATACACAACCTAACAAGCAAAAGAAACACAAAATACAACATCACATTGAACAACAGTTCAAAATAATCTCTTGAATACAAACACTGACAGAACTGCATTTGAGAACATCTTTTTTAAAAACAGTTCAAGTTGGACTTTCAAACCGAAACATCTCAGTCAAAAAGGGACAAATTCCAGTTAATGTGGTATTTAGTTTGTCAGTAGGATACCTCAATGGGTACAGCACAATGGGTAGGATATTCACATACTAGCAAGTCAGCACTGCATTTAAACCACTTGATTATTATGACACCATTAATGTCCATTAAATTATTATACCAATAATCAACAATGCAACACATTGCAAAGTCTATGAATTGGCACTGGCGATCTGTGTGTCACTAGTGCTGTTTTAGGGGAAGAGAGAAACCCAATCCAATGCTATTGATTCACAGATTCCTGTCACCACTCTCAGCCTCCTCAAAAACCGTTTCAAACCTGTGCCCTCTGCTGAAAACTCAACCGTGGGACAGAGAGATCTGGGGCCGCATGTCAAGcgctcagagtaggagtgctgatttaggacaGTTTAACCTTTTAGATcacaatacagtgccttcagaaagtattcacaccccttgactttttccacattttgttgtgttacagcctgaatttaaaatggattcaattgagattttttcactggcctacacacaatacaccataatgtcaaagtggaatgatgatTTCCCCCAAAATTctaaattatactgaacaaaaatataaacgcaacatgtaaggtgttggtcccatgagctaaaataaaagatcccagaactgttccatatgcacaaaaagcttgtttCTATCCAATTTTGAGCAGAAATGTCTTTAAATCCCTGTAAGGGATTAtctctcctttaccaagataatccatccacctgacaggtgtagcatatcaagaagctgattaaacccagtgggtgggcctggctcccaagtgggtgggtctatgctctcccaggcccacccatggctgcgcccctgcccagtcatgtgaaatccacagattagggcctaatgaatttaaatGGTCAGTAAAATTGTtcattgttgcgtttatatttttgttcagtataattaaaaatgaaaagctcaaatgtcttgagtcaataactattcaacccctttgttatggcaagcctaaataagtacatttgttttatttaaaataaacagacattgaatatccctttgagcagcTGTGAAAggtgaaaactgaggatggatcaacaactttgtagttactccacaatactaacctaattgacagagtgaaactaaggaagcctgtacataattcaaatattccaaaacatgcatcctgtttgcaacaaggcagtaaagtaatactgaaaaagATGTGGCAGAGCAATCACTTTTTGTCCTAtatacaaagtgttatatttggggcaaacccaatacaacacattactgagtaccactctccattcTTTTCAAGCATAGAAATGGCTGCATAATGTTATGGGCACGCTTGTAATTGCTAAaggctggggagtttttcaggttaAAATAGAAATTAAATGGagcaaagcacaggcaaaatcttagagtaaaacctggttcagtctgctttccactagatactgggagattaatttacagttcagcaggacaataacctaaaacacaaggtcaaatctacactggttgtttaccaagaagacactgaatgttcctgaatggctgagttacagttttgacttaaatctgcttgaaaatctatggcaagacccaAATacagttgtctagcaatgatcaataaacaatgacagagcttgaagtatttggggcaaatgttgcacaattcaggTGTGAAAAGCTGTTAGAGACTTGCCCAGAGAAACATGTATTGACTAAGTGGGTTGAATACTTAAAGATATACTGTATTAGtgtcatttttcttccactttgacattagattATTTGTAGATGGGTTTAATTGTACGTTTTTTTTTCaaccattttaatcccactttgtaacagcaaaatgttgaaaaagtcaaagggtgttaatacgttctgaaggcaatgtatatacgcttagcaggacaggaggGCTGCAGCTGATCTTAcatcagcactcttactctgaggGCTTGGCACATAATGGGAAGCTAGCCATTACTTTCGTTTTGCACACCACAAGGCAATGAAATGTAACAGGCAGCATTGCACttccctatagagcactacttttaggCTCTGGTGACCTTTATAgttcttggtcaaaagtagtacactataaagggaagagggtgccatttgggataaagACACTGAATCACGCATGGTTAGCAGCATTGATGAGCCATGGAATGGGTTATTACTCCAGTTTGATTCAGGGCATAGTAGTCATTACCAAAGCATCACAGGCTAATTATTTCACAAGTTTATGCATGCATATAATCTGCACAAATTTTCTATGATCACAATCAGAAATGGTACCGATTAATAGTAAGAAAGGAATTCTGATCATTTTCTGCAACTGTGTAGActgaataaaaaataataataggaCAATTGAACTCAGAATTGCTGTAATGGGGATACTGAAGTGACATGAACCTTTTGTATGTATATTTTGACACACAGGGCAATGACAAAGAAACTGATTAAAGAAGCTCCAGTTTTTCTGAAAGAAATAGAACTAACCCTCGCATATCTAGCAACTGTACCGCATAGCAACAGAACCTTTCACATAAATACATGACATATTCTCTTTATTTTCATTTAGAGGAACACTGTTCTTAAAATACTGCTACATTTGAAGGAATAATGCATGTTTTAGTCCGCATCTTTagaaaactgcaaacattttccTGGACACACTCTTTGAAAGTTTTTATCTGCCTGGTAACCACATTTTCAAATTCATTTTGGTttctcttaaagggatacttcgggattttggcaatgaggccctttatctacttccccagggtcagatgaactcatggacacCCTTCTTATATGTTTCTGATTGCGGTTTGAAGGAAGCTGTTAACTTGTGCTAGCATAATTGCTAACTGGatttagcgcaatgactggaagtgtaTGGGTATTTGCAGCTAGCAGGCCTGGGCAAGTCCTGTCCTCTGGGTCCTGAttgtcacacttttgccccagctaacacacctaactccaataatcaactaatcatgagcTTCAGTTAAAAATTGAATTAGTTTaaaatcaggtgtgtttgctagggatgggggaaaagtgTCACACCAAttaggcccccgaggactggaattgTCCAGACCTGAAGCAGATACCcagctagcagatacccatagacttccagtcattgtgctaatgctattTAGGATTGGCTCACGAAACTacttctaacttccttcatactgcacGCAGAGGCATAAATAGGGTGTCCACAAGTTCATcggactctgggtaagtagaaaatTGCCAGAATCTTacagtatccctttaaggttTTGGCAACATTCTTCAAACAATTATGTAAATTGACAATTAGAAAGGCAACATGACAAAGCTACAACTTTGTGCAGGAGGGTAGGCTAAGCCACAAAGTTGTGATTTCTCAGATAACAAATCACAAACCAATCAAATCTGAGCTTTGCTGAAAACCTACATTACATACTCAAATAAGTACAGATATAGATAGGTTCAGTGTTTTAAGactaataaaaaatatttttgctcATAAATAAGTATATTAAAGAAATTCCTATATCTCAAAAAGATAAGTTGTATAGCACTTTCTGCTATTGTTACAGACGATCCTTAAATCGTGACTCGTGTTCCTGCGTCCCATGCTAAATGCCATTGAACTTCCATTGCATTTCACTCTCTGTGTGAGGACATGGTTGTCTCTCATCCTAGATACAGATCACATATCAACTATCCTCAAATTGGAGACTATCCTCAATCACAGATTTTCATATTAATGAGATTGAACGGGATCTTAAGCACttacaaattcgtaacatatcatacgaattgtagGAAATATACATTTATTGTGcaggacgtaacatatcatacaaaatgaatGACATCGTATACAATTGTGCACAATTTTCTGGGACCCATTTTTGGCTCGTGAGcgctactttcaaaactactggctgaactTATACAGAACCTTTCTAGTATCACCTTCAGTAATCCAAAACCCCAATATCTGATCATCTGGAACAAGCAGTCACAATCTTGTAACTGTATAGATCAACACAAATTATGTCCTGCACATGAGTACATCGGCAAAAGGCCCCAGGAGGTTTTTGTTAAAGATGCAGCGCACCCACACCAGGTACGTCGTAAAGGGTTTGATGTTTTCAGAGAAGGTATAGTTCTGGTGGGGGAGAATATAAGGCATGTACGTGTTCTCTCCTTGCTCTTGGATCCACACTTCGTACTTCACTTCCCTGACCTTCAGGTACTTCAGGTTCCAGGGGATTTGCCAGGACACAGTCAGCTTGGCCTCGTTGGTGGCCTGGACCGATGTCTGGCACTGGGGCTCTCTGACCCGGCCCGGGTGGACCGTGCTGGCAGGCTTGGCCTTCTTCAGGTTGGGCCTGGTTTTCACGATCGCTCTGAGAGCCTCTAGTAAAGAAGGGATGTCCACTATGGTGTCCTGGTAAATACGATAGAGCCACTCAGGGTTGCGGCAGCACAGGTGTCTGGGTACTTCCTTACTGGTCAGGATGTGATCCTGCTCTTCCTTATCCAGGTGGGCTATACCTCCCTGCTCCCAGGGCCTCTCTGGGTAGGCCACAGAGTTCTCCTCCACCATGTTCCTCCAGGCCACATACTGCAGATCCATGCCTGGTAGAGAGGCCAGGGTTTTGTAAGGGGTGTACTGCTCTGGGTTGACCGCATAGGGGAAGAGCTCCACAACGACGGCCCCccgggggaggaagagagaggagaccagcTGGGCCCCGTGCATGCTGACCAATATGGAGGCCCCGCTGATGACCTTGACGATTCTGGGGAAGTTCTGCTCCTCCAGAGACACCGTCACCGCTCTCATCTGGAACTCCTGCACTAACGCCAGGATCAGCTCCGCTTCGTTCAGGATGAGTCTGTTGATGGAGCGACTGAACACTACGAAGTACTCATCCTTTTCCTCCGctgcactctcctctcctcctctcgtgGTGATATTGAGCTTCTCCATCAGCGATGAGGCAAACTGGCGGATCTCGTTCCCAGAGACCAGGATGTTGGCTTTGGGGCCCTGTGGCTGGACAAAGCCGTACTGGTACCATGTGGTCATCTTGGACAAGCCCACGTAGGACTTTGTGAAGCACATAAGTTTTCCAAAGTTCCTCAGCTGCTCTTTGAGAAGTGGCTGCTTGTTGCTCAGCAGGCGGTAGAGGTCAAAGTGTGCACCCTCACCCCAGCCCTCCATGAAGACCAGGCGGGCCTCATCATCCAGGTCAGAGTACTGCCGCATGGTGTAGAAGATGGGCAGCAGGTCATCGTGGAACACGTGCATCAGGTTATCCGGATTGAACCGGTTGAGGATGAGGGTGACGTCAGGGACAAACACAGGCTTGGGCATGAACTTGAGGGCAGCTGCGGGCAGCTCCAGGAAGTTGAAGTACTGGGTGTTGTGATCCTCTACAGAGGACAGGTCCAGCAGGGCCGGCTGGAAGCGCCGGGGCCCCAGGTTGGGCAGCATGAAGGAGGAGTTGCTGTGGAAGAAGACAAACTCTTCGGCCTCGGTGCAGTAGCACAGGTAGTCGAAGCGGCAGATGCGGTCAGTGTGCATCTTGCCGGTGCAGACCATGCGGGTGCCATGCTCCTGGAGGGCGAGCAGAGCGGCGTGGTAGTCTATCCGGGCCTGGGACAGCTCCTGGGACTGGCGGGTCAGCTGCAGCTCCTCCTCCAGTACTGCAGCGTGCTCGCTTAGCCTGACGTACTTCCAGAGCAGTGCTGCCACCACCGACACCAGCAGGCCATTCAGAATGGCCGCCACGTTCATCCTGCAGCTCGCCGCACGCATCACAGCTCCACGTCCAATCTGATCTCTGATCTCACATGCATGCTCCG

Function

NR:

description
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266948 True 6851 TUCP 0.43 3 20558776 20565712

Neighbor

gene id symbol gene type direction distance location
LOC110512899 LOC106579931 coding upstream 27437 20509292 ~ 20531339 (+)
LOC110512886 LOC106579923 coding upstream 50345 20490868 ~ 20508431 (+)
LOC110512870 LOC106605416 coding upstream 85250 20446669 ~ 20473526 (+)
LOC110512801 LOC106579904 coding upstream 118758 20354417 ~ 20440018 (+)
LOC110512735 NA coding upstream 212747 20278178 ~ 20346029 (+)
tbrg4 LOC106579951 coding downstream 39453 20605165 ~ 20622065 (+)
LOC110512944 LOC106605423 coding downstream 63700 20629412 ~ 20647074 (+)
LOC118946510 NA coding downstream 136492 20702204 ~ 20709034 (+)
LOC118936416 steap4 coding downstream 153145 20718857 ~ 20758800 (+)
LOC110503853 LOC106579991 coding downstream 193097 20758809 ~ 20783316 (+)
G233515 NA non-coding upstream 5453 20552815 ~ 20553323 (+)
G233508 NA non-coding upstream 9760 20548810 ~ 20549016 (+)
G233507 LOC106566552 non-coding upstream 10111 20548406 ~ 20548665 (+)
G232733 NA non-coding upstream 52118 20506026 ~ 20506658 (+)
G233546 NA non-coding downstream 43188 20608900 ~ 20619825 (+)
G233550 NA non-coding downstream 61319 20627031 ~ 20627367 (+)
G233644 NA non-coding downstream 209183 20774895 ~ 20778525 (+)
G233687 NA non-coding downstream 347442 20913154 ~ 20915815 (+)
G233754 NA non-coding downstream 362186 20927898 ~ 20932727 (+)
LOC110512505 LOC106579702 other upstream 714124 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 1324481 19226366 ~ 19234295 (+)
G231438 NA other upstream 1706794 18851249 ~ 18851982 (+)
LOC110511593 LOC106579240 other upstream 1971935 18569698 ~ 18588248 (+)
G230916 NA other upstream 2262671 18295354 ~ 18296105 (+)
G233545 NA other downstream 42581 20608293 ~ 20608725 (+)
G234322 dcst2 other downstream 698363 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 721014 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 1451882 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 1492830 22057484 ~ 22068080 (+)

Expression


Co-expression Network