G233942


Basic Information

Item Value
gene id G233942
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20702205 ~ 20709007 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU267407
ctcggagcgcgctcccactcaaacacatgcatcagtTTAAATACagatcatgacgtcatttcaCTGCCTTAACCGAACCCCCTCCTCTCGACAGGACAAAgtaaggtgaaaagttcattctaacttactaacacactcccagataacttttgacccctcaacattatcgatcaccactgaactgacagttttaattaacagaaaccctaggaatgcactcactgccttatctaaaaaccccagagctaagtttcaggttgggtcaaccataggctaacgaccttatgtgtttacacagtccacaacccatttgttcctgcccagttggaatggtgttcattaacatTTTATTACTCCTTTCTCTTGTCACACAAtttcttcttatgaactcatattgccTATTAAACATAAtataacagagtataagtttacttacagttccatttaaaatgatttgttcagtcatatTAATCATAATTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267407 True 482 lncRNA 0.41 2 20702205 20709007

Neighbor

gene id symbol gene type direction distance location
glipr2l LOC106605424 coding downstream 50153 20648378 ~ 20652052 (-)
LOC110512925 NA coding downstream 106650 20590446 ~ 20595555 (-)
trnat-ugu-32 NA coding downstream 110077 20592056 ~ 20592128 (-)
trnat-ugu-31 NA coding downstream 118853 20583280 ~ 20583352 (-)
LOC110512912 LOC106579937 coding downstream 120673 20563648 ~ 20581532 (-)
si:dkey-12j5.1 LOC106580016 coding upstream 218947 20927954 ~ 20968368 (-)
LOC110513019 LOC106580057 coding upstream 382780 21091787 ~ 21100107 (-)
LOC110513063 thbs3 coding upstream 403215 21112222 ~ 21133895 (-)
LOC110513075 NA coding upstream 427070 21135542 ~ 21152356 (-)
LOC110513123 LOC106580095 coding upstream 459133 21168140 ~ 21172480 (-)
G233917 NA non-coding downstream 45702 20656201 ~ 20656503 (-)
G233914 NA non-coding downstream 47745 20654197 ~ 20654460 (-)
G233514 NA non-coding downstream 149755 20552215 ~ 20552450 (-)
G233491 NA non-coding downstream 168709 20529880 ~ 20533496 (-)
G233479 NA non-coding downstream 193840 20506750 ~ 20508365 (-)
G233955 NA non-coding upstream 20815 20729822 ~ 20730058 (-)
G233957 NA non-coding upstream 22971 20731978 ~ 20732335 (-)
G234013 NA non-coding upstream 114369 20823376 ~ 20829272 (-)
G234069 NA non-coding upstream 205140 20914147 ~ 20915906 (-)
G234102 NA non-coding upstream 275158 20984165 ~ 20984574 (-)
G233513 LOC106561082 other downstream 150208 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 945587 19756204 ~ 19757908 (-)
G232980 NA other downstream 1053576 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 1103104 19416054 ~ 19652601 (-)
G234224 LOC106605437 other upstream 469590 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 736481 21438546 ~ 21455972 (-)
G234600 NA other upstream 760654 21469661 ~ 21469945 (-)
G234621 NA other upstream 789401 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 1029838 21738845 ~ 21743411 (-)

Expression


Co-expression Network