G233820


Basic Information

Item Value
gene id G233820
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21096997 ~ 21100178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU267262
CTATTTGAATAGACGCTAACTATTTAAGACTGTGTGTTGTTGCAAAACGATCTCCCACACTCTTGGAACCCATCAACAGCACTCAGACTGAAGTCAACACCGTTCAAATCACACCTCTGTTGTAGCTCCGTATGAGACACTGCGTAAACGTCCCCACCTCACTCGTTCCAATAGGAAAAAGGCGAAGTAGGTTTTGCCTGCACTGACACCAAAGTCCCAAACTGTCCGAGTGAGCTGCCGACACTGATGTCCAGTCTCAAACTGGTTTCATGGCAAGCCGCTTTTCCTTCCTCCCTCGATGTCGGTATAAATCACTCGTGTCGAACACCTGCTGCTCGCGTAACAACTGTCCACTTGGGCGCACACTCTGCTAGCCACCGGGGGGCTATTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267262 True 394 lncRNA 0.47 2 21096997 21100178

Neighbor

gene id symbol gene type direction distance location
itga8 LOC106580029 coding upstream 5705 21026137 ~ 21091292 (+)
mindy3 LOC106580009 coding upstream 74640 20968444 ~ 21022357 (+)
LOC118946512 LOC106579994 coding upstream 185584 20846997 ~ 20911413 (+)
LOC110503853 LOC106579991 coding upstream 313681 20758809 ~ 20783316 (+)
LOC118936416 steap4 coding upstream 338197 20718857 ~ 20758800 (+)
LOC110513109 muc1 coding downstream 56998 21157176 ~ 21164038 (+)
LOC118946533 NA coding downstream 66372 21166550 ~ 21169783 (+)
dcst2 dcst2 coding downstream 139857 21240035 ~ 21263153 (+)
LOC110513224 LOC106580132 coding downstream 165240 21265418 ~ 21269804 (+)
trim33l LOC106580136 coding downstream 170338 21270516 ~ 21281833 (+)
G233753 LOC106580016 non-coding upstream 132842 20963756 ~ 20964155 (+)
G233754 NA non-coding upstream 164270 20927898 ~ 20932727 (+)
G233687 NA non-coding upstream 181182 20913154 ~ 20915815 (+)
G233644 NA non-coding upstream 318472 20774895 ~ 20778525 (+)
G233550 NA non-coding upstream 469630 20627031 ~ 20627367 (+)
G233824 NA non-coding downstream 7307 21107485 ~ 21107689 (+)
G233830 NA non-coding downstream 10861 21111039 ~ 21111260 (+)
G233840 NA non-coding downstream 32135 21132313 ~ 21132544 (+)
G233869 NA non-coding downstream 67447 21167625 ~ 21167864 (+)
G233545 NA other upstream 488272 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 531285 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1252345 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 1862702 19226366 ~ 19234295 (+)
G231438 NA other upstream 2245015 18851249 ~ 18851982 (+)
G234322 dcst2 other downstream 163897 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 186548 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 917416 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 958364 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 1204315 22303641 ~ 22304906 (+)

Expression


Co-expression Network