G233830


Basic Information

Item Value
gene id G233830
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21111039 ~ 21111260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU267272
AAGAAGTCCTGTATCTTCGGCTATGGATAATTGCAGAATGGGTTCGGAATGCATTTAAGAAAACAGATCCAGCATATAAGGAATTCTGGACTAATAAGAACCCATATTTCTAACTGCCTGGCGAATTGTTGATGATGCATTTTCATAAGCCATATCAAACATATTCAAGAGAATGGCGACACTATATGAATGAAGAGGCAATGAATCACTTGTGACTTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267272 True 222 lncRNA 0.54 1 21111039 21111260

Neighbor

gene id symbol gene type direction distance location
itga8 LOC106580029 coding upstream 19747 21026137 ~ 21091292 (+)
mindy3 LOC106580009 coding upstream 88682 20968444 ~ 21022357 (+)
LOC118946512 LOC106579994 coding upstream 199626 20846997 ~ 20911413 (+)
LOC110503853 LOC106579991 coding upstream 327723 20758809 ~ 20783316 (+)
LOC118936416 steap4 coding upstream 352239 20718857 ~ 20758800 (+)
LOC110513109 muc1 coding downstream 45916 21157176 ~ 21164038 (+)
LOC118946533 NA coding downstream 55290 21166550 ~ 21169783 (+)
dcst2 dcst2 coding downstream 128775 21240035 ~ 21263153 (+)
LOC110513224 LOC106580132 coding downstream 154158 21265418 ~ 21269804 (+)
trim33l LOC106580136 coding downstream 159256 21270516 ~ 21281833 (+)
G233824 NA non-coding upstream 3350 21107485 ~ 21107689 (+)
G233820 NA non-coding upstream 10861 21096997 ~ 21100178 (+)
G233753 LOC106580016 non-coding upstream 146884 20963756 ~ 20964155 (+)
G233754 NA non-coding upstream 178312 20927898 ~ 20932727 (+)
G233687 NA non-coding upstream 195224 20913154 ~ 20915815 (+)
G233840 NA non-coding downstream 21053 21132313 ~ 21132544 (+)
G233869 NA non-coding downstream 56365 21167625 ~ 21167864 (+)
G234215 NA non-coding downstream 63159 21174419 ~ 21174623 (+)
G234217 NA non-coding downstream 65141 21176401 ~ 21176696 (+)
G233545 NA other upstream 502314 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 545327 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1266387 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 1876744 19226366 ~ 19234295 (+)
G231438 NA other upstream 2259057 18851249 ~ 18851982 (+)
G234322 dcst2 other downstream 152815 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 175466 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 906334 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 947282 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 1193233 22303641 ~ 22304906 (+)

Expression


Co-expression Network