G234224 (LOC106605437)


Basic Information

Item Value
gene id G234224
gene name LOC106605437
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21178597 ~ 21180682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU267728
ATATGAAAGAGTAGACGCAACAGGGCTCTGTAAACGTTGTAAAAGGATCCTAGATTATAGCCTAGTACTTCCGTGTTTGTACATTAGCTGTTCCCGAACCTGGAAAAAGTGGGCAAGTGGTGTTTGTTGAAGTCAACCACCCACATAAGGATCATCAACCATGTCCACCTCTATCACCACTGCAAATGGAATTGTGGTAGTGTCACAAGTTTTCCACTTGGCGGAGAATGACAAGGCTTCAGTGCCACTTCTGAATGTCACTCCCCAGATCCAGAGTGCGCCCCCTGCTGTGCCACTGCCTACCACTAAAGTGTCAGAGATGACAAGGGTGTTCCTGCAGCTTCAGCCACAATCTCTTGGGATTGTGCAGATCGTCCTTGGATTGGTGTGCATGGTGGTGAACCTGTCTGCTCTTCTCACCCCTATCATGTATGACCAGTTCCCACTCTTCATGGGAGTTGCTTTTGTCCTCTCTGGATCTCTCACTGTGGCTGCCCGGAAAGGAACACGTTTGAGTCTGATTAAAGGGACTCTGGCTGTGAATGTTGTCAGTGTTCTTGTGGCTCTGGCTGGGGTTGCCTATATTTGTATGCTTCTGACTGTGAAACATGAAGATAGTTTCTGCACCAACACTGATGACAACTATACTTCCAATTCCAACCAGAACAGGATAAAGGAATGCACAATTATGGTTAGGACACTATATGTGAGTATTTATGGAAGTGACCTGGTTCATGTAATTTTGCTG
>TU267729
atgtctgcagctgtATTAAAGTATCAAGCTTTCAGCGTGTAGTTTTCTTTGCAGGTGTTTGTTGAAGTCAACCACCCACATAAGGATCATCAACCATGTCCACCTCTATCACCACTGCAAATGGAATTGTGGTAGTGTCACAAGTTTTCCACTTGGCGGAGAATGACAAGGCTTCAGTGCCACTTCTGAATGTCACTCCCCAGATCCAGAGTGCGCCCCCTGCTGTGCCACTGCCTACCACTAAAGTGTCAGAGATGACAAGGGTGTTCCTGCAGCTTCAGCCACAATCTCTTGGGATTGTGCAGATCGTCCTTGGATTGGTGTGCATGGTGGTGAACCTGTCTGCTCTTCTCACCCCTATCATGTATGACCAGTTCCCACTCTTCATGGGAGTTGCTTTTGTCCTCTCTGGATCTCTCACTGTGGCTGCCCGGAAAGGAACACGTTTGAGTCTGATTAAAGGGACTCTGGCTGTGAATGTTGTCAGTGTTCTTGTGGCTCTGGCTGGGGTTGCCTATATTTGTATGCTTCTGACTGTGAAACATGAAGATAGTTTCTGCACCAACACTGATGACAACTATACTTCCAATTCCAACCAGAACAGGATAAAGGAATGCACAATTATGGTTAGGACACTATATGTGAGTATTTATGGAAGTGACCTGGTTCATGTAATTTTGCTG

Function

NR:

description
membrane-spanning 4-domains subfamily A member 4A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267728 False 748 TUCP 0.49 5 21178597 21180682
TU267729 True 683 TUCP 0.42 4 21178597 21180097

Neighbor

gene id symbol gene type direction distance location
LOC110513123 LOC106580095 coding downstream 6117 21168140 ~ 21172480 (-)
LOC110513075 NA coding downstream 26241 21135542 ~ 21152356 (-)
LOC110513063 thbs3 coding downstream 44702 21112222 ~ 21133895 (-)
LOC110513019 LOC106580057 coding downstream 78490 21091787 ~ 21100107 (-)
si:dkey-12j5.1 LOC106580016 coding downstream 210229 20927954 ~ 20968368 (-)
LOC110513176 LOC106605439 coding upstream 18083 21198765 ~ 21230066 (-)
dcst1 dcst1 coding upstream 49987 21230669 ~ 21239790 (-)
LOC110513266 LOC106580174 coding upstream 128162 21308844 ~ 21320007 (-)
LOC110503878 LOC106605446 coding upstream 139510 21320192 ~ 21331512 (-)
LOC110513307 polr3gl coding upstream 195142 21375824 ~ 21388805 (-)
G234223 NA non-coding downstream 3272 21174681 ~ 21175325 (-)
G234187 NA non-coding downstream 51263 21127126 ~ 21127334 (-)
G234179 NA non-coding downstream 67136 21110939 ~ 21111461 (-)
G234313 NA non-coding upstream 78224 21258906 ~ 21259200 (-)
G234332 NA non-coding upstream 89169 21269851 ~ 21270146 (-)
G234378 NA non-coding upstream 112193 21292875 ~ 21293076 (-)
glipr2l LOC106605424 other downstream 526901 20648378 ~ 20652052 (-)
G233513 LOC106561082 other downstream 626600 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1421979 19756204 ~ 19757908 (-)
G232980 NA other downstream 1529968 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 1579496 19416054 ~ 19652601 (-)
LOC110513321 LOC106580205 other upstream 264806 21438546 ~ 21455972 (-)
G234600 NA other upstream 288979 21469661 ~ 21469945 (-)
G234621 NA other upstream 317726 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 558163 21738845 ~ 21743411 (-)
LOC118946878 NA other upstream 563769 21744425 ~ 21755710 (-)

Expression


Co-expression Network