G234355 (LOC106580174)


Basic Information

Item Value
gene id G234355
gene name LOC106580174
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21308844 ~ 21312450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU267885
TGGAGTATAACTTTTTATTTGCACGTTGAATGACTGTtaatgaaaaaaaacacacaagttAGCATCCGCGTAATATACTCAGCACATAGGAAAATGTACGTTTTAGACACCGTTTGCATTACTGGCAAGTATTTCATTACATAGTTTAACTCCATGTATTTGGATAGAAGATACCTTGAAATAATCATTTGTACCAGTCCACGATCAGTCATTATTACAGTTTGTTTACATTACGTTTCATATTTTATTCCAAATTAGTTAACAAGGATATTTCAACAAAGGAAGTAGCTACACTGAAGGTCGAAGGTGGGGAGACAAGGTGAAGTAAGCCCCTTTTATACCTTGTTCTAACTTGCGTcttttgtcctgatcttgtccacagtctgattgtgcccacatttttagacaggtgtTGACAATCaaaagacacattgtgatctCATTGTGATCTTTTTGTGTCTAGACATCTTACAAGTGTAGACAGATCTGGACagaaaaaccatttaaatcatcattattCCGGCCTCTAAAATCAGTGACAGGAGGCTGATtacatcaatatgtgtcttacagtaaatatatatacaaatattatAGCTGTGACATGATTTGCATAAAGGAAGGGACCAGGAACTCTGGTCACAATGCAGACACAGTGGACAGATAACAGACTCATTTTAATACCATGTGTAGACACACTTCtggaaatgtgggcacaatcagaatgtagaCAAGATCAGGACTAAGGAcccatgttagcaccaggtataaacggggctaTAGACAGTCAAAATGGTGGGGGTTCTGATCGCAGGAGTTTGCTGCCAAAAGCAAACAAGGCAGCTCATATGTATTGCAACACAATTTTATGCTTTCCCCTTGCCCTGTCAAGACACAAACCTGCAGTCTTACTTAAGTATTTTCACCTTGGCTTCACTGAGATTACTGTTCTCCCAGAGTTTCACACAGTCAATTTGCCAGACTGCACTGCAGTAAATGTTACACAGTGTGATGTAAAGCCATTGCAGCTAGACTCCCCATGTCTCCACTGAGTAGGCCTACagcacaggtgtcaaactcattccacggagggccgagtgtctgcaagtcctcccttgtacttgattgatgaattatggtccctaattagtaaggaactccccactAATTGTTGTCTAGGGCTtcattgaaaggaaaaaccaaaaaacctgcagacactaggccctccatggaatgagtttgacacccctgacctACGATGTACAATGATGACAGAGCATCAGTCATACAGCCAAATCCTCACAGGGTGTGATAGGTGTTATGATGGGTTCACTAATATGTCAAATACTGTGACTTCTCTCATTATGAGGAATGAAGCATTAAAAGGAATTTGAGATATTAGTGATCCAAATAAAGAAGGTGCAAagaaagaGAAATAAGGGACTGTaaagagagagctagaaagaAAGTGCGAAGGAgggtcagagagagtgagagagcgggagaaaaagaggaggaagagaggatggagaggttggTGATAGTAGAGGTGTGGGGGTTTGCCCACCTGTGTCTCGTCCTTCTGGTCATAAAGCCTAGCCAAGCCAGAAGTTAGCAGTAGCCACCCCACTGCCATGTCCTGCTCTGAACCCCATCACCACTTATATTATTCTAAACAGTGCACCTGGGCTCTGcagtctccacacacacacacatacaggagcTTCAACCTGTGAGGCTATTCACTATAGAAAAGTGTTGCCTTCAAGATATAAAGTACTGTTCTTTTATACAATATAATCTTGAAATTAGCCAAATGAAAGAGACAAAAATACACAAAGGGCTCGATTTAATCCGTATCGCTCAAGTTCAGCGctattgaaatgtaaaggcaatgtaaAGCCAATGTTCCCAAGTTCGCgaagactgcattcacggtaaacgctgcatatgacAGCTCAATAAAAAATTACGTTTACATTTCAAGCACGCTATAGCGCAGAACTTCGGTGATTCGGATTGAATCGAGTCCTAAAAGATGAGCATGGCAGCAAAGGCCAAAATATATCTGGAATATTCTGTATAAACCTTTTGGAAACCACACAGCAAAACATGACCCTTTACAACTCTTCATGTCAAAACCATTATTCACAATAATATCAGTGACTTTCAAAAAACATCTGGCACTACAAGCTCCTAACTAGCATGTGTTATTACCTGGTTATTACAGTACTAAGACTAACCTGCTGCAGTGATAGTTCAGTAATTTGCTTATACTGTGGTAAATGCTTTTTCAATGCCACAGTATGAGAAGATGTCATATTTCTTGTGATCacatgttaaatcaaatcaaatcaaattatatttgtgacatacacatggttagcagatgttaatgcgagtgtagcgaaacgctACATGTATCCATGTAATAATGTTTTGGTTGTTTATTACATTCATATTTTCAGACCGAATTTGTTCTAAAAATGAAcccaaaataaatatatttgcaGTGAAATCACATTTGTCTTAACAACAAAGAATCAATTGGTTTGAAACCTTGATGGTTTTCATGTTAGATACAGAGCTTGTCATCAAATATGGTAATGCCACTGAACGACAACAGTTAGGCCCCAAAACATTTCATGGGTAGAATTTTCTAGCTGTCCTATTCGTTGCTACctttagagagagaaaaaaattctCACTATCAATATAAGCAATACTTCTGTTTCCTTcctacatttgatttgatgatattTCTGTTTAATTCAGACATGCGATGAATGAAGTACAATATTGGCAAGGGGAGGATTTTGAAGTCTGACAATTCTTTATTTTTTAAGCATTTGCATGTATCCTCCCATCGCCTAAACTTCATACAACATGGCCAGACAATAATAACAGCCTTGAATGTGTGATCCTGGTCAGACTTTGGTTAACAAACTTTTTTATTTTCATTACTCGTACCCAAATGCTGAGACTGAGTGTCTCTATAATTCTGTAGTGGTGTGggttatatatatgtatgtttATCTGTATGCATGTTTGTTACTTTAATTCGATCCTGTAGTTGAACCTTAACCACTGTAAAGTCCACTGTACAAGTCCCACCAGGAATGTTGTTCATTTTTTGTTGGTATTATTCACAAGAGAATGTATGGCATGGGGAAAAGCCACTCTCTCGGCAAGAagtccctctcttcccctcctccacctccccctataCACAGGTAGAACTATATGCATTAGGTGGTGTGAGGAGCTAGTATTCACTGAGGTTGTGCCACTTTGAGATCTGCCGACGGGGGTTTTCGCAGACTTCCCGCCAGTGGGCGGCGCCAGAGGGACAGGGGCTGTGCAGGCCGAGGGGCAGGCGCCCCACCACCTCGTTCTTAGTGGTACGGTCAAAGTCGACCACCACAAACTCCACGGAGATCTCAGGGAGCAGCTCGGGGGGCACGTCGTAGATGAAGGACTCGTTGAAGACGGGGTTTAACGTGCACTTCTTCACGTGCGTCTTTTTCTTGGCGATGCGCTTGCGTCCGTAGAACACATTGACCTTCACAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267885 True 3570 lncRNA 0.35 2 21308844 21312450

Neighbor

gene id symbol gene type direction distance location
zgc:171704 LOC106580162 coding upstream 23103 21283497 ~ 21285741 (+)
trim33l LOC106580136 coding upstream 27011 21270516 ~ 21281833 (+)
LOC110513224 LOC106580132 coding upstream 39040 21265418 ~ 21269804 (+)
dcst2 dcst2 coding upstream 45691 21240035 ~ 21263153 (+)
LOC118946533 NA coding upstream 139554 21166550 ~ 21169783 (+)
LOC110513274 LOC106580182 coding downstream 44995 21357445 ~ 21360824 (+)
LOC110513285 LOC106580187 coding downstream 77967 21390417 ~ 21407197 (+)
LOC110513388 LOC106580236 coding downstream 160494 21472944 ~ 21483516 (+)
LOC110513414 gnrh-r coding downstream 180709 21493159 ~ 21497274 (+)
LOC110513472 creb3l4 coding downstream 307275 21619725 ~ 21624474 (+)
G234353 NA non-coding upstream 4296 21304321 ~ 21304548 (+)
G234345 NA non-coding upstream 14451 21294031 ~ 21294393 (+)
G234344 NA non-coding upstream 15050 21293388 ~ 21293794 (+)
G234317 NA non-coding upstream 47618 21260805 ~ 21261226 (+)
G234360 NA non-coding downstream 7771 21320221 ~ 21322885 (+)
G234361 NA non-coding downstream 10568 21323018 ~ 21323318 (+)
G234362 NA non-coding downstream 11751 21324201 ~ 21324431 (+)
G234370 NA non-coding downstream 23896 21336346 ~ 21336639 (+)
G234369 NA non-coding downstream 24229 21336679 ~ 21337125 (+)
G234340 LOC106580151 other upstream 21842 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 44338 21264075 ~ 21264506 (+)
G233545 NA other upstream 700119 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 743132 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1464192 19821356 ~ 19844652 (+)
kiaa0319 LOC106580477 other downstream 705144 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 746092 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 992043 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 1148090 22460524 ~ 22472917 (+)
G235571 NA other downstream 1360286 22672736 ~ 22698834 (+)

Expression


Co-expression Network