G234468


Basic Information

Item Value
gene id G234468
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21435293 ~ 21440035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU268003
CTTTCAGATGTTTTATGTTTCCATTACATAAAAGGTCCACATAGACCATATCATCATTTGACCACATCAAATACTTGAAAACATCGCTTAAACTTTATTGACAGAATATGATGCAAGCCATTGGAGTCATATTGTGACAGTATTGCGTTGTGTTGTTGAGAGTATTCCAAGTTCTGTTTGACACAACATCTAGTACTCCTTCATCTTTTAAAACGTGTATTTGAAGACTCGCTTCATGACCATGGCTAGGTTAGCACATAGCTTATCCATTAGGACTGTATTTTAAACACACAGCGGGTAGTTCATCTCATGAGTCTCTTTCTTACTTATATGTGGACCATGCACTGCCTTTCCCTGGAAAATATATACTAggagaaaaaaaaagataatGAAATGTCCCATTCCAGTTGTCTGATCTACGCCAAGCCTTACAATAATTTTTACGaggatacatttttaaaagtgtacgataatgataataatatgaaCTAATCGCTAACTGAACATCAATGCTGCTGAAAGTAAAGCATGTAATAACAGCGGAGCACTTCATACAATGTATAGACAAAGTGGTCCTGGGATAGATCAAACAACTCTTCATAAAAGATGATCCTACTGCCTCTAAGTACTAGAAAACAAGATATAGAAAGTTGAGAATGCTTTTGATAGTAAATAGAAAAACCCcacacatttttgcacatttgtgGCACAGGAATGATCAATAAACAAAATGACAAGCTTCACAATATCCATGGCTTTTTGTTAGTTTTTCTATACAATGTATACCCAACTTGAATTCAATGTGTCTTATTCCACAAAGGAGGAACGCTTATGTACAATAAATAGATCATTATTATAACTACAGCCGTTCGAGATAATATTACCTGACAATTTCAATTTCTTTAGTTAATTATATTTCTTGATTTTTCCTTTTCCccatttttttgtaaaaaattGACAGAAATGAAATTGAAAGACAGATCAGCAAAGTgtagtttttttaaatgtttgaaaCCTTACAAAAATTACATTTGAAAATTATATTTTTCCTGTTTTTCTTTAGTTTCTTTAAAACAAACATTTTGAAATGGTGCATCTGGCATAGTTTGAGAAAGCGAGAAAGATTGATGATGAAGTCTATAACGCATACATACAACAAAAGAGGACAAAGAAAACTATCAAAAACAGTGAGTGTCACTATTGACACTATTGTTCATCCCAAACAATGATCTAGCTGTGGAGTGTTCTGTGTTATTGGACTACGGCAAaccctgggtcgtgttcattaggcacaaaCAGTAGGAAAGGTTTTCAAACAAACGGACAACAGAAATTAAATCCCCTATAGGACAAGTGCAGGTAGTACTACCTCCGTTTAAAATATTTGCTTCAGTTTGGTGCTTACTGAACACGGCCAATACAACATCTGTTCCATCTGGGTGCAACAGAAATAGTGCTTATACTACTGTATATGGGAGTAAGGCTACCTAACTGTAGTTGGGACGCTAAATGGATAAAATAGTAACATTCAGCACAAATACTCAAATTAACTTTATCTTCCCTGTGTCTCAAAATATTGCACCTGCTTTTGAAGTCTATCAAAAAGGGCAAGGAGTAATCCACTGCTCTCTGGCAATATGTCTAATGTTATGTTTTAAAACTGCAGGGTATAAGAGGCAATAACCAGGCAACTCCTGCTtgcaagaaaaaaaaaataattagaaTTAATATTTCCTGCTGTTTTAAAATGGATGCACCAGTATTAGTTACTTCCAAATTTGATCCTGAAATAATTAAACATCATGCATTGCTGAAATAGAGCCACAATTATCATGAGATGGAACAATAATCAATTCAATAATAATCTATCAATTCATCCTGGATTCCTGGTGGACAGAAACAATATCCTTACTCTCTGTACCTAAGTgcttatgtacagtaccagtcaaacgtttggacacacctactcattcaagggtttttctttatttttactattttctacattatagaataatagtgaagacataaaaactatgaaatcatgtagtaaccagtgttaaacaaatcaaaatatattttatatttgagattcttcaaagtagccaccgtttgccttaatgatagctttgcacactcttggcattctctcaaacagcttcatgaggtagtcacctggaatgcatttcaattaacaggtgtgccttgttaagttaatttgtggaatttctttccttcttaatgcgtttgagctaatcagttgtattgtgacaaggtaggggtggtatacatacagaagatggtcttttaccaaatagggctaagtccatattatagcaagaacagctcaaataagcaaagagacacgacagtctatcattactttaagacgtgatggtcagtcaatacagaacatttcaagaactttaaagtttcttcaagtgcagtcgcaaaaaccatcaagcgctatgatgaaactggctctcatgaggaccaccacaggaaaagaaaacccagtgttacctctgctgcagaggataagtacattagttaccagcctcagaaattgcaacccaaataaatgcttcacagagttcaagtaaacagacacatctcaacatcaactgttcagaggagactggtctgataagtccaaatttgcgatttttgtttccaaccgccatgtctttgtgagacacagagtatgtgaacggatgatctctgcatgtgtggttcccaccatgaagcatggaagaggaggtgtgatggtgctttgctggtgacactgtcagtgatttatttagaattcaaggcacacttaaccagcatggctacagcattctgcagcgatacgccatcccatctggtttgcgcttagtgggagtatcatttgtttttcaacagaccaggctgtgtaagggctatttgaccaagaaagagagtgatggagtgctgcatcagatgacctggtctccaaaatcacccgacctcaacccaattgagatggtttgggatgagttggactgcagattgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttcgagactgttggaaaataatttcaggtgaagctggttgagagaatgccaagattgtgcaaagctgttatcaagacaaatggtggctactttgaagaatctcaaatataatttgatttctttaacacttttttggttactacatggttccatatgtgttattttatagtattgatgtcttaaactattttctacaatgtagaaaatagtaaaacaatgaaaaacccttgaatgagtaggtgtgctcaaacttttgactgttactgtatatcctgtatatgtctCCTATAACTGTTTGATTTATGTAAATATTCAAGTTGCATTTGtcattctgtatttatttattgtctcCTGTGCAAAGTACCTTTCAGATACACTAACACTTTAGAAGACACCAAACATCTAAATAGCTTAGAGCAGGCTTAAAGCTAATAGCTAGCCACTCTCCCTGACCGTTTTCAAATGCCTCCCAGACACCATGGGGATAATGTTGACATAAGAAAGTTCAAATAGTATCTCAACAGAATCCAGAACTTTGAATGACAGGGTAGAGTGAACAATAGCAAATCCTATTAGCTAGGAGAtgaaaacaggggAGGTGAAAGGATACAGGGCAACTCTGCTATAGGTTCAGTTTCTATGCCTTCATGTACAATGGGAGTAGTATTTTTTCAGCAGTGCAACCAATCCAAGTCCAGATGTTGCATTGGGCTCTCTCTCTTTGTGGGATATGTATCCATCCTTGTTTCAACAATCAGTTAGAGGAGCATTGCTTCAGACAACTCCAGGGTCTCAAACATCCTCTTTTCTCCCCACAAATCTTTGAAGAAAGCTCAAGCTCAAAGGCTTGACAGATTGAGGTCAAAGTTAAACCATCACAATCACCTTTTTAAAACAAAGGTTTGGCCGGGCTGGTAGAATTCCTCCTCCAACAATtcacaaccaaatgtggaaaaacagAGTGATGGTTGAAATCAGAAATCAGACTAAGAGCAGGGATTGGAGAGTGGTGCAGTTCTCAAAAAGATAGCTTGGTAATTCCCGACATAACAAAGACTTGAGTCCGGTAAGGAAAGCTCAAGCGAGACAAAATATTGCTTCAAAAACAAGCGCATAAATCGAAAACAAAAGACACCCCACACTCGGGACACTGCCACAAGCATATAAAGACAGGGGTTCTCCACAAAGATGGGCACGCTCATAACTGGTAGCGGCAATGTAGTAACAACATCCATAGCACTAATGACGATATTAATAACAAGAGGAATTAAAAGGGGTTTGCATCACGTTCAAATGAAAAGTCATTTCAGAGTTTGGTGGCCTCTTTTGACTCGTTGATTGTGTTCTTCATACAGGTTAGTTTGGTAGGCACACTAACAGGCACTGCATGCGATGGGGGTTGGGGTGTGGTGTGGGGAAGGGCTGTGGTATTGCGTCGGGGCGGGGTGAGGTTCATTTCTGTCCGCTGATGGACTGGGATATGGAGCGAGGCGGGATCATGTCCAGCAGGTATTCCCTCTGACGGTCAGCCAGGCTCGACCCCTTGTGGCCGACCACGTTGCCTGGGTTCAGGTAGGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268003 True 4655 lncRNA 0.48 3 21435293 21440035

Neighbor

gene id symbol gene type direction distance location
LOC110513285 LOC106580187 coding upstream 28096 21390417 ~ 21407197 (+)
LOC110513274 LOC106580182 coding upstream 74469 21357445 ~ 21360824 (+)
zgc:171704 LOC106580162 coding upstream 149552 21283497 ~ 21285741 (+)
trim33l LOC106580136 coding upstream 153460 21270516 ~ 21281833 (+)
LOC110513224 LOC106580132 coding upstream 165489 21265418 ~ 21269804 (+)
LOC110513388 LOC106580236 coding downstream 32909 21472944 ~ 21483516 (+)
LOC110513414 gnrh-r coding downstream 53124 21493159 ~ 21497274 (+)
LOC110513472 creb3l4 coding downstream 179690 21619725 ~ 21624474 (+)
LOC110513504 LOC106580325 coding downstream 192305 21632340 ~ 21643258 (+)
LOC100136306 LOC106580330 coding downstream 209406 21649441 ~ 21713248 (+)
G234463 NA non-coding upstream 7963 21427058 ~ 21427330 (+)
G234439 NA non-coding upstream 47004 21387993 ~ 21388289 (+)
G234422 NA non-coding upstream 71556 21363393 ~ 21363737 (+)
G234420 NA non-coding upstream 72699 21362305 ~ 21362594 (+)
G234400 NA non-coding upstream 96768 21338320 ~ 21338525 (+)
G234480 NA non-coding downstream 17801 21457836 ~ 21459196 (+)
G234491 NA non-coding downstream 29828 21469863 ~ 21470188 (+)
G234496 NA non-coding downstream 45629 21485664 ~ 21485893 (+)
G234497 NA non-coding downstream 45954 21485989 ~ 21486190 (+)
G234340 LOC106580151 other upstream 148291 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 170787 21264075 ~ 21264506 (+)
G233545 NA other upstream 826568 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 869581 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1590641 19821356 ~ 19844652 (+)
kiaa0319 LOC106580477 other downstream 577559 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 618507 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 864458 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 1020505 22460524 ~ 22472917 (+)
G235571 NA other downstream 1232701 22672736 ~ 22698834 (+)

Expression


Co-expression Network