G235157


Basic Information

Item Value
gene id G235157
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21883239 ~ 21919236 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU268793
ACACTGAAAACACCTTTTGATTTACTCTATGGGGAGAGAGCACATTGGGGAGTTGATTATGGAAAATCGCCGCATTTACCATCAAATTAAGTGCCCATTTACAACTGCCCAATCAATGCCCAGTGAGAAAACACCATTGAAGTGCAATTTGAAGTAGGATTGGAGTTATTAGCATATCTGACACCACCTTATGCAGAGAGATGCCAAAGATGGTTTCCACATTTAGCATGGGCATCATCAACAGACAGATCAATACAGAGATCAATGATTGGTTTTGACTGCATAGTGCATGCAGTGTGTAGATTGGCTCAGGGTCCTCTTACTTAGAAATACCATTGAATTCAATCAAACATGCACTTTAACATTTGCAGAAAAAAAAAGTTGCCTATACTGATAAGTTTAGATAATACCCTTGTGTCCCTTCTCCCTATTCATTGGCCCCTATGCTTCCATTTTGGCAGTGGAATGCGTAGTGATTGGCTGATCACTCCCCTCCCCCACATCTTATTGGGAAAAATAACAATTAGTTTAGAGGTCTACAGCTGCAATTGGCTAGAATATCTGCATTCAATTCTGTCTGAAGCTATACAACATTTATATCCCTTCAATGACCTACAACTCATTCACAATTACATTTCCTGATCTTGAAGGGGGAAGTTaactggggggaaaaaaaacattcagtTTACAGTAACTTGTGACATTGGCCCTTTTTTGGAAAATGACTCCAgataaaaacaaaaatacaaatgtcATGCAACTAAACAAAACACTTCTCCCTTTTAAGAAATAAACATGTCACCCCCCCCAGCCCTTACTTGTAAATTAACACAAAATACTTGACAAAAGGTAGCACAGTTGTGGACCCTCTGGGCATTGGCACAGTAGAAAAGCAGTGCTTGTGTAAGGATGTTCCAGCAGAAGGTGAGTGGTTAGAGGGGGACAAGAGTTTGAGGCGATATGTTGGTAGGGCAAGTGGTTGATGGGGATAACAGAGGGAGAGTTTATGATCAAAATGGTGGTCCCATTCCAAAAGGGAGAAATAATTAGGTAAGAGTTATTACCCTCGCCACCTTCATATGTGTCCCAGTGGACACCAAATATCCCCGTAACAAGGGTtatcagaaagagagaaaagccTCGATGTATTTAAAACGCTTACGGCtaaaacagctagcagccaaagAAAGATCATAGGAATGGCCTCAAAACACACCTAAGCTGGAATGTGAATATTAGAAACCTGTGAGACACTTAAGATGTGGGTGCTTGAGTAAATGTTGCCCTTTTAAGACTAAAAGAAAGCTATGAAGAGGCTATAAAAaaaataagggggggggggtgctcatcCAGAGAGCATCCGCAGATACTGGGGTGGAATGTGGGAGGGGCGGTCAGCCATTTTGGTCTACTGGGGAGAAACATTTGGCTAGGTGTGGACTGAAGAAAGTGCTACCTTCACCAAAAACAATGAACATCCCCCCCCACGCTAAACAGTCAGccagcacagacagagagacagggccaGAGGTGAGGGGGTGGAGCAGTAAGAGGTGGTGGAGGGGCCAGTAGCCACTCAGAAGCTGTTGAGGTCCTCCAGGGTCTTGTCCAGGGTGGCGTGGATGTTGACATTCTCCTCCTTGGCGTTGGCTAGCGCATCTGTAAATCACACAAAGAAAGAACGAATGTAAGATAAGGGTCCTCCTGGTG

Function

NR:

description
tropomyosin alpha-3 chain-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268793 True 1710 lncRNA 0.43 2 21883239 21919236

Neighbor

gene id symbol gene type direction distance location
LOC110513558 LOC106580365 coding downstream 122420 21756657 ~ 21760819 (-)
LOC118946878 NA coding downstream 127529 21744425 ~ 21755710 (-)
LOC118944502 LOC106580547 coding downstream 164908 21716853 ~ 21718331 (-)
LOC110513497 NA coding downstream 263578 21612154 ~ 21619661 (-)
LOC110513449 LOC106580288 coding downstream 274109 21587450 ~ 21609130 (-)
LOC110503903 LOC106605471 coding upstream 17946 21937182 ~ 21949846 (-)
LOC118944504 LOC106605473 coding upstream 120242 22039478 ~ 22040884 (-)
LOC110513791 LOC106580504 coding upstream 124153 22043389 ~ 22051474 (-)
LOC110513818 gbp coding upstream 170620 22089856 ~ 22091328 (-)
LOC110513832 ccne2 coding upstream 375631 22294867 ~ 22302014 (-)
G235165 NA non-coding downstream 77488 21805530 ~ 21805751 (-)
G235145 NA non-coding downstream 93859 21788047 ~ 21789380 (-)
G235052 NA non-coding downstream 250450 21632282 ~ 21632789 (-)
G234623 NA non-coding downstream 382308 21500650 ~ 21500931 (-)
G235229 NA non-coding upstream 23868 21943104 ~ 21943891 (-)
G235235 NA non-coding upstream 32541 21951777 ~ 21952115 (-)
G235236 NA non-coding upstream 32998 21952234 ~ 21952452 (-)
G235274 NA non-coding upstream 87669 22006905 ~ 22007104 (-)
G235276 NA non-coding upstream 90482 22009718 ~ 22010013 (-)
G235092 LOC100194668 other downstream 139828 21738845 ~ 21743411 (-)
G234621 NA other downstream 384407 21498408 ~ 21498832 (-)
G234600 NA other downstream 413294 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 427523 21438546 ~ 21455972 (-)
G235881 NA other upstream 654597 22573833 ~ 22574989 (-)
G237047 NA other upstream 1237873 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1852288 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 2261320 24180556 ~ 24183964 (-)
G237832 NA other upstream 2601983 24521219 ~ 24521544 (-)

Expression


Co-expression Network