G234823 (LOC106580458)


Basic Information

Item Value
gene id G234823
gene name LOC106580458
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21902492 ~ 21906182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU268416
TTGAATTGAGTTTTATTACATCTTACACAGTGTTTCTGGTGCCCAGCATGGTGGGGCATGGCATTGTTAACAGTGCAAAAAAAGGTCCATGTAGCACATCAGAGACTGGCACCATCGTTATACACAGGGCAGGTCAGGGGTCACGAGGGGTTAGGCTACACAACTCCGAGATATGTGCTTGTCCATTCAGTAGTACCTCCACACAAGGCTAGCCTTCAGTAACTAACATGCACTGCAAAACGATATATAGCTTAAAATTGTCTCACATCACAGAACTGTTCTTCCGCTATATATTATATTTAGTTTCCATGCACAACATTACAGAAACATTTTAGTAACATATTGCTTAGGCTAATGGAGGGATATAATTCTAATAGTATAAGTTATTGTTACTAGTAGTTTGACTACTTGGTGTAGAGATATTAATTAACAATACGGTAAACATTGTTGTCATTGGTCAGTAGGGGACACACCCTCTCTTTCAGCCAATGAGAGGCTACAGTCCTGGAGTATGTAGTATAGAGAGGACAAAGTACAGGGACTTTCAATGGTGGTATCAATCTCATTGTTACAAAAATCTGTACATTTACAAAGAGTATAGAAACAAAAGATTTGAAAAGTATGTGACACCCTATGTCTCTGATAATGTGCCCtagctacacacacactgtcactggcAAATTGACAGATttattgaaagaaaagcaaaaactgaaacaaaaaaaacacccTACATCCTTGGAGTTTCAAGCGACAGTATCTTTACACAATTCATGAGTGAGGGGAAGGGCGGCGGGTTAGAAGGGGATGGAGGGGGTGTGGTTAGGTGGAAAGAGGAGTGGTTTATAAGGGGGCAGGGGCTGAAATGTCCTCAGCACAGAGCACAAGAGCTAGCTCTGTCCTGTATAGCTTGCCCCCGTCTGATAGCGCCATAATGGCGGTCTTATATGTGGGGATTTTGTTGACTTCCAGCACCTTCTTGTTCTTCTCACACAAATCTTTGAGGAGGGCATCCAGCTCATTCTCATCCATATAACCATTCTCatcCTGATCGTATAACTCAAAGATCTTGTTGAACTCTCTCCTCACCATCTTCACATTCTGAAACTTGAGTAGAAAGTTCTCCTCGTCCGGTAGCAGcCTCGCCATTTCTGCCAAACACAACTTCCCATCG

Function

NR:

description
PREDICTED: calbindin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268416 True 1174 lncRNA 0.41 5 21902492 21906182

Neighbor

gene id symbol gene type direction distance location
LOC110513748 decr1 coding upstream 8501 21889013 ~ 21893991 (+)
LOC110513633 LOC106580396 coding upstream 17724 21857318 ~ 21884768 (+)
LOC110513614 LOC106580392 coding upstream 47337 21846132 ~ 21855155 (+)
arhgef2 LOC106605464 coding upstream 56904 21790333 ~ 21845588 (+)
LOC110513574 LOC106580380 coding upstream 113118 21773668 ~ 21789374 (+)
LOC118944503 NA coding downstream 104748 22010898 ~ 22012458 (+)
kiaa0319 LOC106580477 coding downstream 111397 22017579 ~ 22037490 (+)
LOC118947026 LOC106605474 coding downstream 145353 22051535 ~ 22057256 (+)
LOC110503910 LOC106580557 coding downstream 151302 22057484 ~ 22068080 (+)
LOC118944657 LOC106580616 coding downstream 250165 22156347 ~ 22224887 (+)
G234822 NA non-coding upstream 1653 21900282 ~ 21900839 (+)
G234817 NA non-coding upstream 19507 21881051 ~ 21882985 (+)
G234813 NA non-coding upstream 34191 21867784 ~ 21868301 (+)
G234812 NA non-coding upstream 35382 21865793 ~ 21867110 (+)
G234799 NA non-coding upstream 98376 21803883 ~ 21804116 (+)
G234834 NA non-coding downstream 21717 21927899 ~ 21928166 (+)
G234843 NA non-coding downstream 34881 21941063 ~ 21941718 (+)
G234844 NA non-coding downstream 35705 21941887 ~ 21942100 (+)
G234847 NA non-coding downstream 37964 21944146 ~ 21944393 (+)
G234855 NA non-coding downstream 46389 21952571 ~ 21953313 (+)
G234340 LOC106580151 other upstream 615490 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 637986 21264075 ~ 21264506 (+)
G233545 NA other upstream 1293767 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 1336780 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 2057840 19821356 ~ 19844652 (+)
G235426 LOC106581355 other downstream 398311 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 554358 22460524 ~ 22472917 (+)
G235571 NA other downstream 766554 22672736 ~ 22698834 (+)

Expression


Co-expression Network