G235785 (LOC106580611)


Basic Information

Item Value
gene id G235785
gene name LOC106580611
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22283880 ~ 22284776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU269502
GGTCCACACAGTAGAGGGGGTTACGGCAGGGCTTGGCACTGCAGGCGTCTGAGTGACAGCCGGAGATCACCCCCCTCCGCTCCAACACTGTACTGAACTCTGTACTCTGACCATCCAGAGGGAGGGAGTGGCCGTTCAGCCTCACATCGCGCAAGCAGCCCTGGAAGTCTGCAGATTGTCCAGGGGTTGGTCCATTTCCCAGCAGCACACTGGAGGGGTGCACTACAATCTCCCGCCTGTTCCCCATCCAGGCCCTGACCTCCCGCGAGCCACCACCCTGCTCCAGGCGCAGCGTGAAGAGGTTGTCGTGACGATGCAAGCTGGCGAGGACCCACTGGCCCCCGTCGACTCGCTGGCTGGCCAGGCGGAGGGAGTGGGCACCGTCGCCCAGGTTGGCATGCACCGACAGGTGGCCGTCTACGATct

Function

NR:

description
neural-cadherin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269502 True 426 lncRNA 0.49 2 22283880 22284776

Neighbor

gene id symbol gene type direction distance location
LOC110513818 gbp coding downstream 192552 22089856 ~ 22091328 (-)
LOC110513791 LOC106580504 coding downstream 232406 22043389 ~ 22051474 (-)
LOC118944504 LOC106605473 coding downstream 242996 22039478 ~ 22040884 (-)
LOC110503903 LOC106605471 coding downstream 334034 21937182 ~ 21949846 (-)
LOC110513756 LOC106580458 coding downstream 357566 21902473 ~ 21926314 (-)
LOC110513832 ccne2 coding upstream 10091 22294867 ~ 22302014 (-)
LOC110513844 LOC106581355 coding upstream 21163 22305939 ~ 22317533 (-)
LOC110513910 LOC106605373 coding upstream 39946 22324722 ~ 22336054 (-)
LOC110513923 LOC106605373 coding upstream 51686 22336462 ~ 22341729 (-)
trnas-aga-55 NA coding upstream 159314 22444090 ~ 22444171 (-)
G235750 LOC106580611 non-coding downstream 41948 22241024 ~ 22241932 (-)
G235312 NA non-coding downstream 188842 22092314 ~ 22095038 (-)
G235283 NA non-coding downstream 266566 22016919 ~ 22017314 (-)
G235279 NA non-coding downstream 270316 22013257 ~ 22013564 (-)
G235278 NA non-coding downstream 270710 22012937 ~ 22013170 (-)
G235793 NA non-coding upstream 34150 22318926 ~ 22319165 (-)
G235794 NA non-coding upstream 34579 22319355 ~ 22319576 (-)
G235779 NA non-coding upstream 37389 22322165 ~ 22323438 (-)
G235740 LOC106581338 non-coding upstream 59388 22344164 ~ 22347983 (-)
G235801 NA non-coding upstream 72602 22357378 ~ 22357604 (-)
LOC118946878 NA other downstream 528379 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 540469 21738845 ~ 21743411 (-)
G234621 NA other downstream 785048 21498408 ~ 21498832 (-)
G234600 NA other downstream 813935 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 828164 21438546 ~ 21455972 (-)
G235881 NA other upstream 289057 22573833 ~ 22574989 (-)
G237047 NA other upstream 872333 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1486748 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1895780 24180556 ~ 24183964 (-)
G237832 NA other upstream 2236443 24521219 ~ 24521544 (-)

Expression


Co-expression Network