G235432


Basic Information

Item Value
gene id G235432
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22322102 ~ 22323420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU269090
TGTATGAATTAAGTCCTAAATAGCACCAACCTATCCCAGACAAGACATTGATACTGAAAAAAATGGCTTTATTGGTGAAAAAGAATCTTCACAAACTCAGCAGTGACATGCCAACCACCTTAAACTGCAGTTTGTTGTTCTCAATTCTTGCATTTGCATATTAACGGCAATACGTTTCAAGTAGACAAGATATGCGAGTTGTCATTCACAGCAATGACTGTAAAGGAGGCACAAGCATGAGAAACATTTACACCAGTTTTAGTTCATTGACTTTAGTTTGTGATTAACACTATACGTGACTCAAGTGCATCAAATACATTCCTTGACAAATATTAACATATTATCAAACGTATAAATATTGAAGTAGCAATTCCTGTCCCTTATGGGATGGGAACTAAACAA
>TU269089
ATGGCTTTATTGGTGAAAAAGAATCTTCACAAACTCAGCAGTGACATGCCAACCACCTTAAACTGCAGTTTGTTGTTCTCAATTCTTGCATTTGCATATTAACGGCAATACGTTTCAAGTAGACAAGATATGCGAGTTGTCATTCACAGCAATGACTGTAAAGGAGGCACAAGCATGAGAAACATTTACACCAGTTTTAGTTCATTGACTTTAGTTTGTGATTAACACTATACGTGACTCAAGTGCATCAAATACATTCCTTGACAAATATTAACATATTATCAAACGTATAAATATTGAAGTAGCAATTCCTGTCCCTTATGGGATGGGAACTAAACAATTATTTCCTTGCCTGAGTAAAACAAAAAGAGATAATATACATTTGTTCAAAACTAGACTAAATCAACCCCCAATTATTTGGCATTATGCTAGGTTCGGTACGTTTTAGGGACCACCCACTGGTGGACCTCTGACAAAATTTAGCTTGATTCTACATGTAGAATTGGTTTGCAAATTATGTCCGGCACGTTGTTCAGAGTTGGTAAGTACTTTTGGCCGGCAAACGCTACCGGTGTGAAAATTCAGTGGGTGCTTATATTTATCCAAGTAAATACACGTgggaattggaaatgtgttttttgcatatttCTAACCTTCCCAAGACACCCTCAGggtgaccctggagcaattacggttaagtgccttgctcaagggcacagacagatttttcaccttgatGGCTCGTAGATTTGAACTAGggaactttcggttactggcccaatgctccaaccattaggctacctgccacctagaTGTTCCAGGGTAGTGAGGCCGGGTACCTCTTGTTGGCCATCTAGCTCAGAAGCAGCATAAAACGTCTACAATTTACCAAACAAAACCAGTCTCGCAACTCTCCAACAGGCAAATGTATTGAAACAAACTTCTACTCAAGCAACCACCTTGATTTGCATTTTGCCTTGCCTGAAGTTCAATGGTGAGAACACAAATGAAATTCCTCCATTCTCTTCACCAGTTCAAGGAAGTGCGAGTCAAGATAGGTAACTATACAAACACAACAGCATCGCTAGCACACAGTGAGTCATTATCACTGTATAAAGTCCTTTCAATGTTTTTGAGCACAAGTCATTAGCCGTCTCAGTGGGACAACCCAACTCCCTAACAGCCTCGATATAGACCACAATTTGGTAACCTGCATGTTAAATACACATGTAACAACACCATCAAACACATTTCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269090 False 402 lncRNA 0.50 1 22322102 22322503
TU269089 True 1257 lncRNA 0.40 1 22322164 22323420

Neighbor

gene id symbol gene type direction distance location
LOC110503919 LOC106605377 coding upstream 31912 22227628 ~ 22292941 (+)
LOC118944657 LOC106580616 coding upstream 97215 22156347 ~ 22224887 (+)
LOC110503910 LOC106580557 coding upstream 254234 22057484 ~ 22068080 (+)
LOC118947026 LOC106605474 coding upstream 264846 22051535 ~ 22057256 (+)
kiaa0319 LOC106580477 coding upstream 284612 22017579 ~ 22037490 (+)
LOC110513878 LOC106581338 coding downstream 18324 22341744 ~ 22357183 (+)
LOC110513938 plekhf2 coding downstream 53341 22376761 ~ 22404817 (+)
LOC110513964 LOC106605368 coding downstream 107201 22430621 ~ 22441465 (+)
LOC110514034 NA coding downstream 137104 22460524 ~ 22472917 (+)
LOC118947118 NA coding downstream 162632 22482472 ~ 22488203 (+)
G235429 NA non-coding upstream 2879 22318922 ~ 22319223 (+)
G235428 NA non-coding upstream 3365 22318536 ~ 22318737 (+)
G235426 LOC106581355 non-coding upstream 17887 22303641 ~ 22304906 (+)
G235396 NA non-coding upstream 83818 22237940 ~ 22238284 (+)
G235433 NA non-coding downstream 170 22323590 ~ 22325001 (+)
G235434 NA non-coding downstream 1766 22325186 ~ 22325511 (+)
G235435 NA non-coding downstream 2993 22326413 ~ 22326875 (+)
G235438 NA non-coding downstream 7242 22330662 ~ 22330890 (+)
G235440 NA non-coding downstream 8462 22331882 ~ 22332703 (+)
G234340 LOC106580151 other upstream 1035100 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 1057596 21264075 ~ 21264506 (+)
G235571 NA other downstream 349316 22672736 ~ 22698834 (+)
G235569 NA other downstream 350105 22673525 ~ 22685509 (+)
G236271 LOC106581124 other downstream 825732 23144516 ~ 23191853 (+)
G236301 NA other downstream 875432 23198852 ~ 23199075 (+)

Expression


Co-expression Network