G235740 (LOC106581338)


Basic Information

Item Value
gene id G235740
gene name LOC106581338
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22344164 ~ 22347983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU269448
TGGGGTTTCATTAGAACTGTGCCTCTGGCATACTTCATTTGGAGTAGTGACACAAACCCTCACTGTGTTGATAATGCCAAACCGGTCTAGCAGGAATATAATGTCAcaaaggcctgtgtgtgtgtgtgtgtgtgtgtatctggaaTGGCAGTGTAGCATCCATCTGTACAACACGTCACCAGCAGGAAAGTCATCATTttgatacctctgctgcagatatGGTCACTCACCAGCATGCAGATGTCCATAGGTAGGTAGACTTTGCGTCTGCTGCTGTGGTAGGGCGTGGCTCTTAGGCATGTCACAATCCCCTGGGCCTTACCAATGTGGCTGGCAGCATGATCAGCATGGACatctttcacacCTAAACTCTCCAGAAGAAGGTACAGTAGTGAGGACTGGGTATTCTCTGAATAGGCCTCCAACTCCTGGAGGTTTCTATAAGCTCTGTCTTCCATGTCTTTCTCTCTCTCAGAGATTATTCTAAGCATCCACCTCTTTGTCAGGTAGTGTTTCTTCACCGCCCTCCATAGTTCTGCACTGACAGGCTGCACTGGTGGGTCGTCCCTGTAGATTTCCTCCACTGTAGTCTTCCAGAACTGCATCCGCATCAGACCTATGGTCTTCTGGGAAACAGAGTCCTTCACCTTGGAGAGAAACAAAAAAGCGAGGCTTTTCTCAATTCCTTTCAGAAGACATCTTCAATTAATAAGTTTATACTGTTAGGCATACAGATTTGCATGAAAAATGCCTCGCTTTACTAGACCATTCCCTCACTGTTATCCTTCATATCTAGGTCTATAAGTTGATGTATTATTCTAGACATAACAGCATTATCTTCAACAGCATGCCTGAACATCAACACTTAGCTCTGGACATGTATTGGACATATGACCACCCCGAGGATTATAGTATCATCATTTCCAATATATGCATATACata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269448 True 943 lncRNA 0.45 4 22344164 22347983

Neighbor

gene id symbol gene type direction distance location
LOC110513923 LOC106605373 coding downstream 2435 22336462 ~ 22341729 (-)
LOC110513910 LOC106605373 coding downstream 8110 22324722 ~ 22336054 (-)
LOC110513844 LOC106581355 coding downstream 26631 22305939 ~ 22317533 (-)
LOC110513832 ccne2 coding downstream 42150 22294867 ~ 22302014 (-)
LOC110513818 gbp coding downstream 252836 22089856 ~ 22091328 (-)
trnas-aga-55 NA coding upstream 96107 22444090 ~ 22444171 (-)
trnas-aga-56 NA coding upstream 96299 22444282 ~ 22444363 (-)
trnas-aga-57 NA coding upstream 97509 22445492 ~ 22445573 (-)
trnae-cuc-2 NA coding upstream 98761 22446744 ~ 22446815 (-)
LOC110503922 LOC106605367 coding upstream 99144 22447092 ~ 22449700 (-)
G235779 NA non-coding downstream 20726 22322165 ~ 22323438 (-)
G235794 NA non-coding downstream 24588 22319355 ~ 22319576 (-)
G235793 NA non-coding downstream 24999 22318926 ~ 22319165 (-)
G235785 LOC106580611 non-coding downstream 59388 22283880 ~ 22284776 (-)
G235750 LOC106580611 non-coding downstream 102232 22241024 ~ 22241932 (-)
G235801 NA non-coding upstream 9395 22357378 ~ 22357604 (-)
G235805 NA non-coding upstream 12691 22360674 ~ 22360888 (-)
G235810 NA non-coding upstream 16566 22364549 ~ 22364762 (-)
G235809 LOC106955111 non-coding upstream 17128 22365111 ~ 22366009 (-)
G235843 NA non-coding upstream 76230 22424213 ~ 22424529 (-)
LOC118946878 NA other downstream 588663 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 600753 21738845 ~ 21743411 (-)
G234621 NA other downstream 845332 21498408 ~ 21498832 (-)
G234600 NA other downstream 874219 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 888448 21438546 ~ 21455972 (-)
G235881 NA other upstream 225850 22573833 ~ 22574989 (-)
G237047 NA other upstream 809126 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1423541 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1832573 24180556 ~ 24183964 (-)
G237832 NA other upstream 2173236 24521219 ~ 24521544 (-)

Expression


Co-expression Network