G235495 (LOC106581291)


Basic Information

Item Value
gene id G235495
gene name LOC106581291
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22459160 ~ 22460466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU269165
TGCCCCTCCTGGTTCTGCTCTCCTACAGGTGCTGCCAGGAGACACTTGTACCTCCCGCTATCAACAGCCGTTACATTGGGCAGGAAGATATCGAAAGAATCGTCAGCCAAAAGTTCCACTTCACGCTCCAAACCTGCAAACCGTAGGGTGGTGCTGTTAGGTGATAGCCTCTTCATCAATAGACCAGACTCCTTATTATAGGGCTTCTCACCCAGCTTGTACCACCTCACCGCCCGGTACTGGACCCCAGGCTTACGTATTGCTTTACATTTCAGAATTGAGTCCTCTCCACAAACTGACTTCACCTCTTGTGTAGGCTTATCCTGTGTAAGCCCACCTTGCAAGTAGGCAGCTATAGACAAACACAAGGTAAATCATCATTTCAGATGAGTCTGCAGTTAGACTGATATCAAAGTCATTGTTTAATAGAAATTACAACATACCTAGAATGCAGACGAGTTGAAAAAACATATTTGTAGAACTACAGCAATGAAGATGATGATCCAGAAAATAAGTGAATCATTTTATATAGTAAGCTAAAATGG

Function

NR:

description
CD83 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269165 True 545 lncRNA 0.44 2 22459160 22460466

Neighbor

gene id symbol gene type direction distance location
LOC110513964 LOC106605368 coding upstream 17695 22430621 ~ 22441465 (+)
LOC110513938 plekhf2 coding upstream 54343 22376761 ~ 22404817 (+)
LOC110513878 LOC106581338 coding upstream 101977 22341744 ~ 22357183 (+)
LOC110503919 LOC106605377 coding upstream 168970 22227628 ~ 22292941 (+)
LOC118944657 LOC106580616 coding upstream 234273 22156347 ~ 22224887 (+)
LOC110514034 NA coding downstream 58 22460524 ~ 22472917 (+)
LOC118947118 NA coding downstream 25586 22482472 ~ 22488203 (+)
LOC110514095 LOC106581260 coding downstream 52658 22513124 ~ 22544099 (+)
LOC110514114 can7 coding downstream 96656 22557122 ~ 22575110 (+)
LOC110514168 LOC106581241 coding downstream 151570 22612036 ~ 22618089 (+)
G235496 NA non-coding upstream 70 22457195 ~ 22459090 (+)
G235484 NA non-coding upstream 17077 22441825 ~ 22442083 (+)
G235450 NA non-coding upstream 35054 22366840 ~ 22424106 (+)
G235442 NA non-coding upstream 123128 22335687 ~ 22336032 (+)
G235440 NA non-coding upstream 126457 22331882 ~ 22332703 (+)
G235545 NA non-coding downstream 119012 22579478 ~ 22579807 (+)
G235563 NA non-coding downstream 145437 22605903 ~ 22606114 (+)
G235564 NA non-coding downstream 145919 22606385 ~ 22606585 (+)
G235426 LOC106581355 other upstream 154254 22303641 ~ 22304906 (+)
LOC110503910 LOC106580557 other upstream 391080 22057484 ~ 22068080 (+)
kiaa0319 LOC106580477 other upstream 439176 22017579 ~ 22037490 (+)
G234340 LOC106580151 other upstream 1172158 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 1194654 21264075 ~ 21264506 (+)
G235571 NA other downstream 212270 22672736 ~ 22698834 (+)
G235569 NA other downstream 213059 22673525 ~ 22685509 (+)
G236271 LOC106581124 other downstream 688686 23144516 ~ 23191853 (+)
G236301 NA other downstream 738386 23198852 ~ 23199075 (+)

Expression


Co-expression Network