G235938


Basic Information

Item Value
gene id G235938
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22682269 ~ 22685521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU269677
ggtgtataggaaggaaataaaggggtgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaggggtgtataggaaggaaataaaggggtgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtatacgaaggaaatagatggaaataaaggggtgtataagaaggaaatagatggaaacaaagggatgtataggaaggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaggggtgtataggaaggaaatagatggaaataaaggagtgtataggaaggaaatagatggaaataaagggatgtataggaaggaacgagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaacgagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagaggtggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggagggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataatgggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtatacgaaggaaatagatggaaataaaggggtgtataggaaggaaagagatggaaataaaggaatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatatataggaaggaaataaagggatgtatagcagggaaagagatggaaataaggggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaaatgatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggagggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaaagga
>TU269678
ggtgtataggaaggaaataaaggggtgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaggggtgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaatgGATgtataggaaggaaagagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagaggtggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggagggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataatgggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtatacgaaggaaatagatggaaataaaggggtgtataggaaggaaagagatggaaataaaggaatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatatataggaaggaaataaagggatgtatagcagggaaagagatggaaataaggggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaaatgatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggagggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaaagga
>TU269676
ggtgtataggaaggaaataaaggggtgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaggggtgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaatgGATGTATAGGagggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaaaagaaggaaataaaggggtgtataggaaggaaatagatggaaataaaggggtgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtatacgaaggaaatagatggaaataaaggggtgtataagaaggaaatagatggaaacaaagggatgtataggaaggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaggggtgtataggaaggaaatagatggaaataaaggagtgtataggaaggaaatagatggaaataaagggatgtataggaaggaacgagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaacgagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagaggtggaaataaagggatgtataggaaggaaataaagggatgtatgggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaaaggatgtatgggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggat

Function

NR:

description
uncharacterized protein LOC110514198

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269677 False 2545 lncRNA 0.47 3 22682269 22685521
TU269678 False 1936 lncRNA 0.32 3 22682269 22685521
TU269676 True 1650 lncRNA 0.45 2 22683589 22685521

Neighbor

gene id symbol gene type direction distance location
bmper LOC106581223 coding downstream 40508 22618094 ~ 22641761 (-)
LOC110514157 LOC106581233 coding downstream 70298 22608604 ~ 22611971 (-)
LOC110514133 LOC106581253 coding downstream 78939 22575947 ~ 22603330 (-)
LOC110505130 NA coding downstream 133377 22547800 ~ 22548892 (-)
LOC110514079 LOC106605359 coding downstream 175591 22499445 ~ 22506678 (-)
trnap-agg-7 NA coding upstream 163703 22849224 ~ 22849295 (-)
LOC110503928 LOC106581194 coding upstream 163984 22849505 ~ 22866403 (-)
LOC110514295 LOC106605350 coding upstream 182094 22867615 ~ 22869747 (-)
LOC110514303 prdm1 coding upstream 218208 22903729 ~ 22919447 (-)
LOC110514322 LOC106581161 coding upstream 352239 23037760 ~ 23051032 (-)
G235921 NA non-coding downstream 74159 22607877 ~ 22608110 (-)
G235916 NA non-coding downstream 81477 22599830 ~ 22600792 (-)
G235900 NA non-coding downstream 97415 22582825 ~ 22584854 (-)
G235860 NA non-coding downstream 156248 22525403 ~ 22526021 (-)
snrnp48 LOC106581266 non-coding downstream 186345 22488821 ~ 22495924 (-)
G235962 NA non-coding upstream 4370 22689891 ~ 22691471 (-)
G236003 NA non-coding upstream 83645 22769166 ~ 22770663 (-)
G236049 NA non-coding upstream 163323 22848844 ~ 22849153 (-)
G236082 NA non-coding upstream 211799 22897320 ~ 22897536 (-)
G236084 NA non-coding upstream 214196 22899717 ~ 22899933 (-)
G235881 NA other downstream 107280 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 926768 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 938858 21738845 ~ 21743411 (-)
G234621 NA other downstream 1183437 21498408 ~ 21498832 (-)
G234600 NA other downstream 1212324 21469661 ~ 21469945 (-)
G237047 NA other upstream 471588 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1086003 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1495035 24180556 ~ 24183964 (-)
G237832 NA other upstream 1835698 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 2084041 24767049 ~ 24799511 (-)

Expression


Co-expression Network